Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
TFF3Q07654 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.77□□□□□ -0.21
TFF3Q07654 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.77□□□□□ -0.21
TFF3Q07654 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
TFF3Q07654 ZNF767P-206ENST00000513792 565 ntBASIC13.77□□□□□ -0.21
TFF3Q07654 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 AP001282.1-201ENST00000531301 1499 ntBASIC13.77□□□□□ -0.21
TFF3Q07654 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.77□□□□□ -0.21
TFF3Q07654 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 AC010328.2-201ENST00000597698 1111 ntBASIC13.77□□□□□ -0.21
TFF3Q07654 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.77□□□□□ -0.21
TFF3Q07654 REXO1L8P-201ENST00000604378 1897 ntBASIC13.77□□□□□ -0.21
TFF3Q07654 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.77□□□□□ -0.21
TFF3Q07654 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.77□□□□□ -0.21
TFF3Q07654 AC009542.2-202ENST00000619004 1067 ntBASIC13.77□□□□□ -0.21
TFF3Q07654 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 RHOXF1P1-202ENST00000635473 501 ntBASIC13.77□□□□□ -0.21
TFF3Q07654 AC008687.7-202ENST00000637404 953 ntBASIC13.77□□□□□ -0.21
TFF3Q07654 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.77□□□□□ -0.21
TFF3Q07654 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 LINC00554-201ENST00000564841 3011 ntBASIC13.77□□□□□ -0.21
TFF3Q07654 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TFF3Q07654 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.76□□□□□ -0.21
TFF3Q07654 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.76□□□□□ -0.21
TFF3Q07654 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.76□□□□□ -0.21
TFF3Q07654 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
TFF3Q07654 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
TFF3Q07654 MIR1247-201ENST00000408206 136 ntBASIC13.76□□□□□ -0.21
TFF3Q07654 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.76□□□□□ -0.21
TFF3Q07654 RPL13AP20-201ENST00000459725 609 ntBASIC13.76□□□□□ -0.21
TFF3Q07654 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.76□□□□□ -0.21
TFF3Q07654 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.76□□□□□ -0.21
TFF3Q07654 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.76□□□□□ -0.21
TFF3Q07654 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.76□□□□□ -0.21
TFF3Q07654 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.76□□□□□ -0.21
TFF3Q07654 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.76□□□□□ -0.21
TFF3Q07654 MIR3615-201ENST00000581999 87 ntBASIC13.76□□□□□ -0.21
TFF3Q07654 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.76□□□□□ -0.21
TFF3Q07654 AC068587.10-201ENST00000641210 219 ntBASIC13.76□□□□□ -0.21
TFF3Q07654 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC13.76□□□□□ -0.21
TFF3Q07654 AC007950.2-201ENST00000615045 2347 ntBASIC13.76□□□□□ -0.21
TFF3Q07654 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
TFF3Q07654 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.76□□□□□ -0.21
TFF3Q07654 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.76□□□□□ -0.21
TFF3Q07654 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.76□□□□□ -0.21
TFF3Q07654 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
TFF3Q07654 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.75□□□□□ -0.21
TFF3Q07654 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TFF3Q07654 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC13.75□□□□□ -0.21
TFF3Q07654 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TFF3Q07654 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
TFF3Q07654 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.75□□□□□ -0.21
TFF3Q07654 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.75□□□□□ -0.21
TFF3Q07654 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.75□□□□□ -0.21
TFF3Q07654 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.75□□□□□ -0.21
TFF3Q07654 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
TFF3Q07654 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.75□□□□□ -0.21
TFF3Q07654 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
TFF3Q07654 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.75□□□□□ -0.21
TFF3Q07654 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TFF3Q07654 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.75□□□□□ -0.21
TFF3Q07654 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.75□□□□□ -0.21
TFF3Q07654 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms