Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
H3F3AP84243 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
H3F3AP84243 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
H3F3AP84243 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.02□□□□□ -0.16
H3F3AP84243 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.02□□□□□ -0.16
H3F3AP84243 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
H3F3AP84243 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
H3F3AP84243 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.02□□□□□ -0.16
H3F3AP84243 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
H3F3AP84243 SSR4P1-203ENST00000599569 2260 ntBASIC14.02□□□□□ -0.16
H3F3AP84243 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.02□□□□□ -0.16
H3F3AP84243 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
H3F3AP84243 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
H3F3AP84243 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
H3F3AP84243 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.02□□□□□ -0.16
H3F3AP84243 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.02□□□□□ -0.16
H3F3AP84243 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 HMGN1P19-201ENST00000436976 333 ntBASIC14.02□□□□□ -0.17
H3F3AP84243 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.02□□□□□ -0.17
H3F3AP84243 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.02□□□□□ -0.17
H3F3AP84243 FAM207CP-201ENST00000443486 507 ntBASIC14.02□□□□□ -0.17
H3F3AP84243 SPTLC1P1-201ENST00000447199 261 ntBASIC14.02□□□□□ -0.17
H3F3AP84243 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.02□□□□□ -0.17
H3F3AP84243 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.02□□□□□ -0.17
H3F3AP84243 AC104794.3-201ENST00000566840 1248 ntBASIC14.02□□□□□ -0.17
H3F3AP84243 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.02□□□□□ -0.17
H3F3AP84243 AC004790.1-201ENST00000612686 536 ntBASIC14.02□□□□□ -0.17
H3F3AP84243 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
H3F3AP84243 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
H3F3AP84243 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.02□□□□□ -0.17
H3F3AP84243 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 AL136379.1-201ENST00000623471 2642 ntBASIC14.02□□□□□ -0.17
H3F3AP84243 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.02□□□□□ -0.17
H3F3AP84243 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
H3F3AP84243 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.02□□□□□ -0.17
H3F3AP84243 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.01□□□□□ -0.17
H3F3AP84243 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.01□□□□□ -0.17
H3F3AP84243 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
H3F3AP84243 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
H3F3AP84243 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.01□□□□□ -0.17
H3F3AP84243 AC007326.2-201ENST00000624224 7579 ntBASIC14.01□□□□□ -0.17
H3F3AP84243 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
H3F3AP84243 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.01□□□□□ -0.17
H3F3AP84243 TSPY16P-201ENST00000449843 468 ntBASIC14.01□□□□□ -0.17
H3F3AP84243 AL589987.1-201ENST00000453380 819 ntBASIC14.01□□□□□ -0.17
H3F3AP84243 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.01□□□□□ -0.17
H3F3AP84243 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.01□□□□□ -0.17
H3F3AP84243 AC015910.1-201ENST00000579400 975 ntBASIC14.01□□□□□ -0.17
H3F3AP84243 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
H3F3AP84243 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
H3F3AP84243 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.01□□□□□ -0.17
H3F3AP84243 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.01□□□□□ -0.17
H3F3AP84243 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms