Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.41■□□□□ 0.22
HDAC4P56524 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.41■□□□□ 0.22
HDAC4P56524 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.41■□□□□ 0.22
HDAC4P56524 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 AC074044.1-201ENST00000609673 707 ntBASIC16.41■□□□□ 0.22
HDAC4P56524 AF228730.6-201ENST00000641497 218 ntBASIC16.41■□□□□ 0.22
HDAC4P56524 AC084121.3-201ENST00000641716 218 ntBASIC16.41■□□□□ 0.22
HDAC4P56524 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 TMBIM7P-203ENST00000641617 1718 ntBASIC16.41■□□□□ 0.22
HDAC4P56524 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 AC126177.1-201ENST00000547829 2218 ntBASIC16.41■□□□□ 0.22
HDAC4P56524 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HDAC4P56524 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.4■□□□□ 0.22
HDAC4P56524 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 AC126755.1-201ENST00000525846 6405 ntBASIC16.4■□□□□ 0.22
HDAC4P56524 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HDAC4P56524 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.4■□□□□ 0.22
HDAC4P56524 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HDAC4P56524 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.4■□□□□ 0.22
HDAC4P56524 SLED1-202ENST00000512051 380 ntBASIC16.4■□□□□ 0.22
HDAC4P56524 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HDAC4P56524 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.4■□□□□ 0.22
HDAC4P56524 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.4■□□□□ 0.22
HDAC4P56524 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC4P56524 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HDAC4P56524 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC4P56524 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.39■□□□□ 0.22
HDAC4P56524 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HDAC4P56524 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
HDAC4P56524 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
HDAC4P56524 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.39■□□□□ 0.21
HDAC4P56524 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.39■□□□□ 0.21
HDAC4P56524 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HDAC4P56524 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HDAC4P56524 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.39■□□□□ 0.21
HDAC4P56524 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.39■□□□□ 0.21
HDAC4P56524 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.39■□□□□ 0.21
HDAC4P56524 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HDAC4P56524 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.39■□□□□ 0.21
HDAC4P56524 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC4P56524 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms