Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC097065.1-201ENST00000425737 517 ntBASIC21.34■■□□□ 1.01
MSH6P52701 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC21.34■■□□□ 1.01
MSH6P52701 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC21.34■■□□□ 1.01
MSH6P52701 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH6P52701 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC21.34■■□□□ 1.01
MSH6P52701 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MSH6P52701 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH6P52701 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH6P52701 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
MSH6P52701 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH6P52701 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MSH6P52701 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH6P52701 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH6P52701 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC21.33■■□□□ 1.01
MSH6P52701 UBALD1-205ENST00000590891 2641 ntBASIC21.33■■□□□ 1.01
MSH6P52701 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1.01
MSH6P52701 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH6P52701 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
MSH6P52701 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC21.33■■□□□ 1
MSH6P52701 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH6P52701 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH6P52701 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC21.33■■□□□ 1
MSH6P52701 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC21.33■■□□□ 1
MSH6P52701 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH6P52701 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH6P52701 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC21.33■■□□□ 1
MSH6P52701 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH6P52701 RPL18P13-201ENST00000478088 569 ntBASIC21.33■■□□□ 1
MSH6P52701 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC21.33■■□□□ 1
MSH6P52701 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
MSH6P52701 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC21.33■■□□□ 1
MSH6P52701 AC005324.6-201ENST00000587972 613 ntBASIC21.33■■□□□ 1
MSH6P52701 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
MSH6P52701 AC051619.9-201ENST00000623237 597 ntBASIC21.33■■□□□ 1
MSH6P52701 PCBP2-OT1-201ENST00000634357 590 ntBASIC21.33■■□□□ 1
MSH6P52701 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1
MSH6P52701 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC21.32■■□□□ 1
MSH6P52701 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC21.32■■□□□ 1
MSH6P52701 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH6P52701 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
MSH6P52701 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC21.32■■□□□ 1
MSH6P52701 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
MSH6P52701 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC21.32■■□□□ 1
MSH6P52701 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC21.32■■□□□ 1
MSH6P52701 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
MSH6P52701 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC21.32■■□□□ 1
MSH6P52701 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH6P52701 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH6P52701 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC21.32■■□□□ 1
MSH6P52701 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH6P52701 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH6P52701 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH6P52701 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC21.32■■□□□ 1
MSH6P52701 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC21.32■■□□□ 1
MSH6P52701 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
MSH6P52701 IRF3-215ENST00000596822 823 ntTSL 3 BASIC21.32■■□□□ 1
MSH6P52701 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH6P52701 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MSH6P52701 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC21.32■■□□□ 1
MSH6P52701 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH6P52701 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC21.32■■□□□ 1
MSH6P52701 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC21.31■■□□□ 1
MSH6P52701 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC21.31■■□□□ 1
MSH6P52701 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.31■■□□□ 1
MSH6P52701 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
MSH6P52701 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
MSH6P52701 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 LSM5-207ENST00000410044 687 ntTSL 3 BASIC21.31■■□□□ 1
MSH6P52701 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 PUDPP3-201ENST00000445368 636 ntBASIC21.31■■□□□ 1
MSH6P52701 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC21.31■■□□□ 1
MSH6P52701 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 AL160314.3-201ENST00000556041 767 ntBASIC21.31■■□□□ 1
MSH6P52701 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC21.31■■□□□ 1
MSH6P52701 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC21.31■■□□□ 1
MSH6P52701 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC21.31■■□□□ 1
MSH6P52701 AL162426.1-201ENST00000624141 743 ntBASIC21.31■■□□□ 1
MSH6P52701 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
MSH6P52701 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
MSH6P52701 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.31■■□□□ 1
MSH6P52701 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 TBC1D3J-201ENST00000620719 1426 ntBASIC21.31■■□□□ 1
MSH6P52701 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH6P52701 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH6P52701 LRRFIP1P1-201ENST00000498774 2246 ntBASIC21.3■■□□□ 1
MSH6P52701 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
MSH6P52701 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC21.3■■□□□ 1
MSH6P52701 RN7SKP214-201ENST00000364208 315 ntBASIC21.3■■□□□ 1
MSH6P52701 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms