Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC13.13□□□□□ -0.31
HOXA1P49639 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
HOXA1P49639 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.12□□□□□ -0.31
HOXA1P49639 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HOXA1P49639 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXA1P49639 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXA1P49639 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 AC005562.1-201ENST00000583030 3219 ntBASIC13.12□□□□□ -0.31
HOXA1P49639 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXA1P49639 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HOXA1P49639 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.12□□□□□ -0.31
HOXA1P49639 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC13.12□□□□□ -0.31
HOXA1P49639 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13.12□□□□□ -0.31
HOXA1P49639 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
HOXA1P49639 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXA1P49639 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.12□□□□□ -0.31
HOXA1P49639 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.12□□□□□ -0.31
HOXA1P49639 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.12□□□□□ -0.31
HOXA1P49639 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.12□□□□□ -0.31
HOXA1P49639 AC021097.1-201ENST00000607902 574 ntBASIC13.12□□□□□ -0.31
HOXA1P49639 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.12□□□□□ -0.31
HOXA1P49639 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXA1P49639 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HOXA1P49639 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXA1P49639 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HOXA1P49639 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
HOXA1P49639 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HOXA1P49639 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXA1P49639 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 SSR4P1-203ENST00000599569 2260 ntBASIC13.11□□□□□ -0.31
HOXA1P49639 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
HOXA1P49639 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 MRPL20P1-201ENST00000400819 433 ntBASIC13.11□□□□□ -0.31
HOXA1P49639 TSPY19P-201ENST00000418461 509 ntBASIC13.11□□□□□ -0.31
HOXA1P49639 RPS2P1-201ENST00000434010 821 ntBASIC13.11□□□□□ -0.31
HOXA1P49639 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.11□□□□□ -0.31
HOXA1P49639 TSPY18P-201ENST00000441642 509 ntBASIC13.11□□□□□ -0.31
HOXA1P49639 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.11□□□□□ -0.31
HOXA1P49639 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 METTL23-204ENST00000586752 904 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC13.11□□□□□ -0.31
HOXA1P49639 AC008667.4-201ENST00000607370 168 ntBASIC13.11□□□□□ -0.31
HOXA1P49639 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.11□□□□□ -0.31
HOXA1P49639 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
HOXA1P49639 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms