Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 AC023024.2-201ENST00000623561 1993 ntBASIC13.87□□□□□ -0.19
SOX2P48431 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX2P48431 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX2P48431 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX2P48431 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 AC093909.1-201ENST00000504731 1122 ntBASIC13.87□□□□□ -0.19
SOX2P48431 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.87□□□□□ -0.19
SOX2P48431 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 AL138918.1-201ENST00000568306 659 ntBASIC13.87□□□□□ -0.19
SOX2P48431 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.87□□□□□ -0.19
SOX2P48431 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
SOX2P48431 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX2P48431 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX2P48431 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
SOX2P48431 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX2P48431 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX2P48431 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
SOX2P48431 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
SOX2P48431 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
SOX2P48431 LINC00552-201ENST00000625151 2579 ntBASIC13.86□□□□□ -0.19
SOX2P48431 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
SOX2P48431 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
SOX2P48431 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.86□□□□□ -0.19
SOX2P48431 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.86□□□□□ -0.19
SOX2P48431 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC13.86□□□□□ -0.19
SOX2P48431 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
SOX2P48431 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.86□□□□□ -0.19
SOX2P48431 KRT19P2-202ENST00000557173 1012 ntBASIC13.86□□□□□ -0.19
SOX2P48431 AC024267.1-201ENST00000582320 895 ntBASIC13.86□□□□□ -0.19
SOX2P48431 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 AC013726.1-201ENST00000563747 2285 ntBASIC13.86□□□□□ -0.19
SOX2P48431 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.86□□□□□ -0.19
SOX2P48431 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.86□□□□□ -0.19
SOX2P48431 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms