Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC023157.3-201ENST00000619086 2088 ntBASIC16.26■□□□□ 0.19
PTPN9P43378 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.26■□□□□ 0.19
PTPN9P43378 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.26■□□□□ 0.19
PTPN9P43378 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.26■□□□□ 0.19
PTPN9P43378 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.26■□□□□ 0.19
PTPN9P43378 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.26■□□□□ 0.19
PTPN9P43378 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.26■□□□□ 0.19
PTPN9P43378 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.26■□□□□ 0.19
PTPN9P43378 UGT1A2P-201ENST00000454886 866 ntBASIC16.26■□□□□ 0.19
PTPN9P43378 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.26■□□□□ 0.19
PTPN9P43378 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.26■□□□□ 0.19
PTPN9P43378 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.26■□□□□ 0.19
PTPN9P43378 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.26■□□□□ 0.19
PTPN9P43378 AJ011932.1-201ENST00000621707 465 ntBASIC16.26■□□□□ 0.19
PTPN9P43378 AL645728.2-202ENST00000641679 227 ntBASIC16.26■□□□□ 0.19
PTPN9P43378 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.26■□□□□ 0.19
PTPN9P43378 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
PTPN9P43378 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.26■□□□□ 0.19
PTPN9P43378 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
PTPN9P43378 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PTPN9P43378 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PTPN9P43378 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN9P43378 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN9P43378 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN9P43378 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.25■□□□□ 0.19
PTPN9P43378 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN9P43378 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PTPN9P43378 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PTPN9P43378 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.25■□□□□ 0.19
PTPN9P43378 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.25■□□□□ 0.19
PTPN9P43378 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.25■□□□□ 0.19
PTPN9P43378 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN9P43378 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.25■□□□□ 0.19
PTPN9P43378 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 DOC2GP-202ENST00000514950 1163 ntBASIC16.25■□□□□ 0.19
PTPN9P43378 RARRES2P5-201ENST00000564013 466 ntBASIC16.25■□□□□ 0.19
PTPN9P43378 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 AC025181.2-201ENST00000606994 802 ntBASIC16.25■□□□□ 0.19
PTPN9P43378 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PTPN9P43378 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.25■□□□□ 0.19
PTPN9P43378 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.25■□□□□ 0.19
PTPN9P43378 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN9P43378 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN9P43378 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PTPN9P43378 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.24■□□□□ 0.19
PTPN9P43378 AC148477.4-201ENST00000613430 1793 ntBASIC16.24■□□□□ 0.19
PTPN9P43378 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms