Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC144831.1-201ENST00000573312 2656 ntBASIC15.27■□□□□ 0.03
HNF4AP41235 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.27■□□□□ 0.03
HNF4AP41235 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
HNF4AP41235 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
HNF4AP41235 AC127383.1-201ENST00000444697 1800 ntBASIC15.27■□□□□ 0.03
HNF4AP41235 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HNF4AP41235 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 CETN4P-206ENST00000642099 2168 ntBASIC15.26■□□□□ 0.03
HNF4AP41235 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.26■□□□□ 0.03
HNF4AP41235 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.26■□□□□ 0.03
HNF4AP41235 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.26■□□□□ 0.03
HNF4AP41235 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
HNF4AP41235 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 AC067863.1-201ENST00000494933 530 ntBASIC15.26■□□□□ 0.03
HNF4AP41235 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 IGHV3-42-201ENST00000520410 361 ntBASIC15.26■□□□□ 0.03
HNF4AP41235 AC069120.2-201ENST00000524091 540 ntBASIC15.26■□□□□ 0.03
HNF4AP41235 AL079307.3-201ENST00000556114 283 ntBASIC15.26■□□□□ 0.03
HNF4AP41235 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 AC051619.7-201ENST00000568314 623 ntBASIC15.26■□□□□ 0.03
HNF4AP41235 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.26■□□□□ 0.03
HNF4AP41235 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.26■□□□□ 0.03
HNF4AP41235 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.26■□□□□ 0.03
HNF4AP41235 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HNF4AP41235 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HNF4AP41235 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HNF4AP41235 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.25■□□□□ 0.03
HNF4AP41235 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.25■□□□□ 0.03
HNF4AP41235 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HNF4AP41235 FO538757.1-201ENST00000623083 1397 ntBASIC15.25■□□□□ 0.03
HNF4AP41235 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.25■□□□□ 0.03
HNF4AP41235 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HNF4AP41235 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HNF4AP41235 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.25■□□□□ 0.03
HNF4AP41235 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HNF4AP41235 HIST3H2BA-201ENST00000436555 524 ntBASIC15.25■□□□□ 0.03
HNF4AP41235 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.25■□□□□ 0.03
HNF4AP41235 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.25■□□□□ 0.03
HNF4AP41235 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.25■□□□□ 0.03
HNF4AP41235 AC027369.6-201ENST00000525520 931 ntBASIC15.25■□□□□ 0.03
HNF4AP41235 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.25■□□□□ 0.03
HNF4AP41235 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 SPDYE12P-201ENST00000618416 771 ntBASIC15.25■□□□□ 0.03
HNF4AP41235 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms