Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 HSPB1P2-201ENST00000448722 546 ntBASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 NDUFV2P1-201ENST00000596415 907 ntBASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.59■□□□□ 0.89
CSB-PGBD3P0DP91 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 AC126915.1-201ENST00000522847 1038 ntBASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 AC025181.2-201ENST00000606994 802 ntBASIC20.58■□□□□ 0.89
CSB-PGBD3P0DP91 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CSB-PGBD3P0DP91 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CSB-PGBD3P0DP91 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.58■□□□□ 0.88
CSB-PGBD3P0DP91 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
CSB-PGBD3P0DP91 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
CSB-PGBD3P0DP91 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CSB-PGBD3P0DP91 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 SNX21-203ENST00000372541 771 ntTSL 2 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 TISP43-201ENST00000409793 538 ntTSL 4 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 NUS1P3-201ENST00000423502 862 ntBASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 HCG18-245ENST00000602550 559 ntTSL 4 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSB-PGBD3P0DP91 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 HNRNPA1P63-201ENST00000427917 963 ntBASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC20.56■□□□□ 0.88
CSB-PGBD3P0DP91 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms