Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.26■□□□□ 0.03
LDLRP01130 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.26■□□□□ 0.03
LDLRP01130 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.26■□□□□ 0.03
LDLRP01130 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 AC125807.1-201ENST00000483097 614 ntBASIC15.26■□□□□ 0.03
LDLRP01130 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.26■□□□□ 0.03
LDLRP01130 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.26■□□□□ 0.03
LDLRP01130 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 AP001350.2-201ENST00000625104 1094 ntBASIC15.26■□□□□ 0.03
LDLRP01130 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 AC007292.2-201ENST00000593524 1812 ntBASIC15.26■□□□□ 0.03
LDLRP01130 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 FO538757.1-201ENST00000623083 1397 ntBASIC15.25■□□□□ 0.03
LDLRP01130 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 TCAF2P1-201ENST00000291129 2421 ntBASIC15.25■□□□□ 0.03
LDLRP01130 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LDLRP01130 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LDLRP01130 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.25■□□□□ 0.03
LDLRP01130 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.25■□□□□ 0.03
LDLRP01130 FAM58DP-201ENST00000428076 619 ntBASIC15.25■□□□□ 0.03
LDLRP01130 CRB3P1-201ENST00000449338 276 ntBASIC15.25■□□□□ 0.03
LDLRP01130 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.25■□□□□ 0.03
LDLRP01130 AC087163.2-201ENST00000457299 853 ntBASIC15.25■□□□□ 0.03
LDLRP01130 RN7SL589P-201ENST00000481268 310 ntBASIC15.25■□□□□ 0.03
LDLRP01130 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LDLRP01130 AC079140.1-201ENST00000508039 487 ntBASIC15.25■□□□□ 0.03
LDLRP01130 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LDLRP01130 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.25■□□□□ 0.03
LDLRP01130 SLC25A39P2-201ENST00000537614 270 ntBASIC15.25■□□□□ 0.03
LDLRP01130 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.25■□□□□ 0.03
LDLRP01130 AC140878.1-201ENST00000565277 250 ntBASIC15.25■□□□□ 0.03
LDLRP01130 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.25■□□□□ 0.03
LDLRP01130 MIR6752-201ENST00000618442 71 ntBASIC15.25■□□□□ 0.03
LDLRP01130 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LDLRP01130 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LDLRP01130 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
LDLRP01130 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 SNX18-202ENST00000343017 3140 ntBASIC15.25■□□□□ 0.03
LDLRP01130 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDLRP01130 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LDLRP01130 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms