Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA1O95477 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA1O95477 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA1O95477 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
ABCA1O95477 Z97205.2-201ENST00000564697 1639 ntBASIC13.21□□□□□ -0.3
ABCA1O95477 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.2□□□□□ -0.3
ABCA1O95477 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 MIR5189-201ENST00000577370 114 ntBASIC13.2□□□□□ -0.3
ABCA1O95477 AC103810.3-201ENST00000583567 96 ntBASIC13.2□□□□□ -0.3
ABCA1O95477 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.2□□□□□ -0.3
ABCA1O95477 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 AC020765.3-201ENST00000613051 740 ntBASIC13.2□□□□□ -0.3
ABCA1O95477 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA1O95477 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
ABCA1O95477 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA1O95477 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.2□□□□□ -0.3
ABCA1O95477 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
ABCA1O95477 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
ABCA1O95477 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
ABCA1O95477 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
ABCA1O95477 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 HAUS4P1-201ENST00000406739 1145 ntBASIC13.2□□□□□ -0.3
ABCA1O95477 TOMM22P5-201ENST00000416399 439 ntBASIC13.2□□□□□ -0.3
ABCA1O95477 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.2□□□□□ -0.3
ABCA1O95477 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA1O95477 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA1O95477 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.2□□□□□ -0.3
ABCA1O95477 TDH-203ENST00000531764 1110 ntBASIC13.2□□□□□ -0.3
ABCA1O95477 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
ABCA1O95477 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
ABCA1O95477 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA1O95477 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA1O95477 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA1O95477 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.19□□□□□ -0.3
ABCA1O95477 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA1O95477 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 DBET-201ENST00000630918 3363 ntBASIC13.19□□□□□ -0.3
ABCA1O95477 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC13.19□□□□□ -0.3
ABCA1O95477 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ABCA1O95477 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.19□□□□□ -0.3
ABCA1O95477 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms