Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 RPSAP43-201ENST00000402237 625 ntBASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 HIST3H2BA-201ENST00000436555 524 ntBASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 AC026150.2-201ENST00000564693 1156 ntBASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 AC010327.4-202ENST00000591484 748 ntBASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 AL133215.2-201ENST00000609242 977 ntBASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 TNRC18P2-201ENST00000417666 2714 ntBASIC14.21□□□□□ -0.14
HIF3AQ9Y2N7 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 BX842568.4-201ENST00000421222 227 ntBASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 AC023141.5-201ENST00000458585 616 ntBASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 AC112482.1-201ENST00000492080 688 ntBASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 RN7SL828P-201ENST00000607615 303 ntBASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 AC003101.2-201ENST00000612557 442 ntBASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
HIF3AQ9Y2N7 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms