Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 FAM8A3P-201ENST00000427218 844 ntBASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 AC135586.1-201ENST00000539323 574 ntBASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 TSPY26P-202ENST00000565928 3884 ntBASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 BTBD7P1-201ENST00000447253 1453 ntBASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 MIR770-201ENST00000390219 98 ntBASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 AL589987.1-201ENST00000453380 819 ntBASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SMC4Q9NTJ3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 UGT1A2P-201ENST00000454886 866 ntBASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 AC104794.3-201ENST00000566840 1248 ntBASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 AC004790.1-201ENST00000612686 536 ntBASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 AC138035.3-201ENST00000622706 2791 ntBASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC20.11■□□□□ 0.81
SMC4Q9NTJ3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms