Protein–RNA interactions for Protein: Q9HCU0

CD248, Endosialin, humanhuman

Predictions only

Length 757 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD248Q9HCU0 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CD248Q9HCU0 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.59■□□□□ 0.25
CD248Q9HCU0 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CD248Q9HCU0 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.59■□□□□ 0.25
CD248Q9HCU0 AC105021.1-202ENST00000570572 669 ntBASIC16.59■□□□□ 0.25
CD248Q9HCU0 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 AL139011.1-202ENST00000642063 584 ntBASIC16.59■□□□□ 0.25
CD248Q9HCU0 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
CD248Q9HCU0 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.59■□□□□ 0.25
CD248Q9HCU0 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.59■□□□□ 0.25
CD248Q9HCU0 GRK6P1-201ENST00000400595 1711 ntBASIC16.59■□□□□ 0.25
CD248Q9HCU0 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.59■□□□□ 0.25
CD248Q9HCU0 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.59■□□□□ 0.25
CD248Q9HCU0 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CD248Q9HCU0 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CD248Q9HCU0 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
CD248Q9HCU0 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.25
CD248Q9HCU0 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CD248Q9HCU0 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.58■□□□□ 0.25
CD248Q9HCU0 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.58■□□□□ 0.25
CD248Q9HCU0 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CD248Q9HCU0 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CD248Q9HCU0 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 AC244107.1-201ENST00000442033 332 ntBASIC16.58■□□□□ 0.24
CD248Q9HCU0 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 AL596325.1-201ENST00000563991 1082 ntBASIC16.58■□□□□ 0.24
CD248Q9HCU0 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.58■□□□□ 0.24
CD248Q9HCU0 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.58■□□□□ 0.24
CD248Q9HCU0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CD248Q9HCU0 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 AL512652.2-201ENST00000625156 1716 ntBASIC16.57■□□□□ 0.24
CD248Q9HCU0 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CD248Q9HCU0 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.57■□□□□ 0.24
CD248Q9HCU0 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms