Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 RPS8P6-201ENST00000426177 609 ntBASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 FAM185BP-201ENST00000443595 716 ntBASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 AC107918.2-201ENST00000530817 355 ntBASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 MTDHP5-201ENST00000598980 586 ntBASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 ACTL9-202ENST00000612068 1252 ntBASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.14■□□□□ 0.01
PPP4R4Q6NUP7 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.13■□□□□ 0.01
PPP4R4Q6NUP7 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 SLC22A20-204ENST00000530038 1673 ntBASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 AC011477.6-201ENST00000604980 1927 ntBASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms