Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SCN1BQ07699 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SCN1BQ07699 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SCN1BQ07699 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.09□□□□□ -0.15
SCN1BQ07699 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SCN1BQ07699 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.09□□□□□ -0.15
SCN1BQ07699 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SCN1BQ07699 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SCN1BQ07699 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SCN1BQ07699 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SCN1BQ07699 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.09□□□□□ -0.15
SCN1BQ07699 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SCN1BQ07699 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SCN1BQ07699 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
SCN1BQ07699 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SCN1BQ07699 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SCN1BQ07699 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SCN1BQ07699 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SCN1BQ07699 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.08□□□□□ -0.15
SCN1BQ07699 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 AC073621.1-201ENST00000392730 636 ntBASIC14.08□□□□□ -0.16
SCN1BQ07699 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.08□□□□□ -0.16
SCN1BQ07699 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
SCN1BQ07699 KRT18P27-201ENST00000427733 1299 ntBASIC14.08□□□□□ -0.16
SCN1BQ07699 HNRNPDP1-201ENST00000439535 754 ntBASIC14.08□□□□□ -0.16
SCN1BQ07699 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SCN1BQ07699 MIR4492-201ENST00000581627 80 ntBASIC14.08□□□□□ -0.16
SCN1BQ07699 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.08□□□□□ -0.16
SCN1BQ07699 CYP2A7P1-201ENST00000595391 815 ntBASIC14.08□□□□□ -0.16
SCN1BQ07699 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.08□□□□□ -0.16
SCN1BQ07699 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.08□□□□□ -0.16
SCN1BQ07699 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.08□□□□□ -0.16
SCN1BQ07699 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
SCN1BQ07699 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 AC129492.6-201ENST00000611383 1305 ntBASIC14.08□□□□□ -0.16
SCN1BQ07699 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.08□□□□□ -0.16
SCN1BQ07699 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.08□□□□□ -0.16
SCN1BQ07699 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SCN1BQ07699 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.08□□□□□ -0.16
SCN1BQ07699 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 SLC22A20-204ENST00000530038 1673 ntBASIC14.07□□□□□ -0.16
SCN1BQ07699 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.07□□□□□ -0.16
SCN1BQ07699 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.07□□□□□ -0.16
SCN1BQ07699 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.07□□□□□ -0.16
SCN1BQ07699 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SCN1BQ07699 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
SCN1BQ07699 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 MED22-202ENST00000371999 987 ntTSL 3 BASIC14.07□□□□□ -0.16
SCN1BQ07699 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.07□□□□□ -0.16
SCN1BQ07699 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.07□□□□□ -0.16
SCN1BQ07699 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.07□□□□□ -0.16
SCN1BQ07699 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.07□□□□□ -0.16
SCN1BQ07699 DUSP5P1-201ENST00000441325 1139 ntBASIC14.07□□□□□ -0.16
SCN1BQ07699 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.07□□□□□ -0.16
SCN1BQ07699 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC14.07□□□□□ -0.16
SCN1BQ07699 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.07□□□□□ -0.16
SCN1BQ07699 AC087641.1-201ENST00000557561 1021 ntBASIC14.07□□□□□ -0.16
SCN1BQ07699 AC008667.4-201ENST00000607370 168 ntBASIC14.07□□□□□ -0.16
SCN1BQ07699 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.07□□□□□ -0.16
SCN1BQ07699 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.07□□□□□ -0.16
SCN1BQ07699 AC148477.8-201ENST00000624298 468 ntBASIC14.07□□□□□ -0.16
SCN1BQ07699 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.07□□□□□ -0.16
SCN1BQ07699 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.07□□□□□ -0.16
SCN1BQ07699 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.07□□□□□ -0.16
SCN1BQ07699 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.07□□□□□ -0.16
SCN1BQ07699 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
SCN1BQ07699 AC107918.4-201ENST00000641966 3141 ntBASIC14.07□□□□□ -0.16
SCN1BQ07699 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.07□□□□□ -0.16
SCN1BQ07699 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SCN1BQ07699 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms