Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.04□□□□□ -0.16
H3F3AP84243 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 AC126755.1-201ENST00000525846 6405 ntBASIC14.04□□□□□ -0.16
H3F3AP84243 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.04□□□□□ -0.16
H3F3AP84243 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.04□□□□□ -0.16
H3F3AP84243 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 SPDYE18-201ENST00000510091 1050 ntBASIC14.04□□□□□ -0.16
H3F3AP84243 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.04□□□□□ -0.16
H3F3AP84243 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.04□□□□□ -0.16
H3F3AP84243 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.04□□□□□ -0.16
H3F3AP84243 AL391069.4-201ENST00000609583 481 ntBASIC14.04□□□□□ -0.16
H3F3AP84243 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.04□□□□□ -0.16
H3F3AP84243 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.04□□□□□ -0.16
H3F3AP84243 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.04□□□□□ -0.16
H3F3AP84243 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.04□□□□□ -0.16
H3F3AP84243 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.04□□□□□ -0.16
H3F3AP84243 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
H3F3AP84243 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
H3F3AP84243 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.04□□□□□ -0.16
H3F3AP84243 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
H3F3AP84243 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.03□□□□□ -0.16
H3F3AP84243 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
H3F3AP84243 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.03□□□□□ -0.16
H3F3AP84243 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.03□□□□□ -0.16
H3F3AP84243 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
H3F3AP84243 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 AL133267.1-201ENST00000398220 340 ntBASIC14.03□□□□□ -0.16
H3F3AP84243 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.03□□□□□ -0.16
H3F3AP84243 MEIS3P1-201ENST00000495167 958 ntBASIC14.03□□□□□ -0.16
H3F3AP84243 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.03□□□□□ -0.16
H3F3AP84243 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
H3F3AP84243 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.03□□□□□ -0.16
H3F3AP84243 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.03□□□□□ -0.16
H3F3AP84243 AC011467.4-201ENST00000594891 528 ntBASIC14.03□□□□□ -0.16
H3F3AP84243 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.03□□□□□ -0.16
H3F3AP84243 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.03□□□□□ -0.16
H3F3AP84243 AC009118.2-201ENST00000613275 655 ntBASIC14.03□□□□□ -0.16
H3F3AP84243 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.03□□□□□ -0.16
H3F3AP84243 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.03□□□□□ -0.16
H3F3AP84243 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.03□□□□□ -0.16
H3F3AP84243 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
H3F3AP84243 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.03□□□□□ -0.16
H3F3AP84243 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
H3F3AP84243 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.03□□□□□ -0.16
H3F3AP84243 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.03□□□□□ -0.16
H3F3AP84243 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.03□□□□□ -0.16
H3F3AP84243 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.03□□□□□ -0.16
H3F3AP84243 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
H3F3AP84243 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms