Protein–RNA interactions for Protein: P78415

IRX3, Iroquois-class homeodomain protein IRX-3, humanhuman

Predicted RBP Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX3P78415 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.31■□□□□ 0.52
IRX3P78415 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
IRX3P78415 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC18.31■□□□□ 0.52
IRX3P78415 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.31■□□□□ 0.52
IRX3P78415 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.31■□□□□ 0.52
IRX3P78415 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.31■□□□□ 0.52
IRX3P78415 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC18.31■□□□□ 0.52
IRX3P78415 PHKG1P2-201ENST00000457537 863 ntBASIC18.31■□□□□ 0.52
IRX3P78415 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC18.31■□□□□ 0.52
IRX3P78415 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.31■□□□□ 0.52
IRX3P78415 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.31■□□□□ 0.52
IRX3P78415 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC18.31■□□□□ 0.52
IRX3P78415 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.31■□□□□ 0.52
IRX3P78415 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
IRX3P78415 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 AP001282.1-201ENST00000531301 1499 ntBASIC18.31■□□□□ 0.52
IRX3P78415 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.31■□□□□ 0.52
IRX3P78415 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
IRX3P78415 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
IRX3P78415 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.31■□□□□ 0.52
IRX3P78415 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
IRX3P78415 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
IRX3P78415 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.3■□□□□ 0.52
IRX3P78415 TUBB1P2-201ENST00000422712 1306 ntBASIC18.3■□□□□ 0.52
IRX3P78415 TUBB1P1-201ENST00000503144 1300 ntBASIC18.3■□□□□ 0.52
IRX3P78415 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 AL133338.1-201ENST00000565695 1517 ntBASIC18.3■□□□□ 0.52
IRX3P78415 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
IRX3P78415 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 GZMB-202ENST00000382540 816 ntTSL 5 BASIC18.3■□□□□ 0.52
IRX3P78415 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
IRX3P78415 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 RNA5SP412-201ENST00000516234 123 ntBASIC18.3■□□□□ 0.52
IRX3P78415 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC18.3■□□□□ 0.52
IRX3P78415 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.3■□□□□ 0.52
IRX3P78415 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC18.3■□□□□ 0.52
IRX3P78415 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 AL606495.2-201ENST00000605867 535 ntBASIC18.3■□□□□ 0.52
IRX3P78415 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 GPR182-203ENST00000622922 591 ntBASIC18.3■□□□□ 0.52
IRX3P78415 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
IRX3P78415 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
IRX3P78415 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 TP73-213ENST00000604479 1623 ntTSL 5 BASIC18.3■□□□□ 0.52
IRX3P78415 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
IRX3P78415 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
IRX3P78415 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.3■□□□□ 0.52
IRX3P78415 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
IRX3P78415 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
IRX3P78415 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
IRX3P78415 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
IRX3P78415 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.29■□□□□ 0.52
IRX3P78415 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
IRX3P78415 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.29■□□□□ 0.52
IRX3P78415 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
IRX3P78415 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
IRX3P78415 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms