Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AC232323.1-201ENST00000540724 2099 ntBASIC17.68■□□□□ 0.42
TPM4P67936 REXO1L5P-201ENST00000622260 2098 ntBASIC17.68■□□□□ 0.42
TPM4P67936 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TPM4P67936 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TPM4P67936 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TPM4P67936 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TPM4P67936 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TPM4P67936 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TPM4P67936 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TPM4P67936 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC17.68■□□□□ 0.42
TPM4P67936 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TPM4P67936 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 AL390755.1-201ENST00000623716 2027 ntBASIC17.67■□□□□ 0.42
TPM4P67936 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.67■□□□□ 0.42
TPM4P67936 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 AC140658.5-201ENST00000438532 169 ntBASIC17.67■□□□□ 0.42
TPM4P67936 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.67■□□□□ 0.42
TPM4P67936 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.67■□□□□ 0.42
TPM4P67936 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TPM4P67936 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.67■□□□□ 0.42
TPM4P67936 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM4P67936 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.67■□□□□ 0.42
TPM4P67936 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.67■□□□□ 0.42
TPM4P67936 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM4P67936 MIR4313-201ENST00000580760 101 ntBASIC17.67■□□□□ 0.42
TPM4P67936 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.67■□□□□ 0.42
TPM4P67936 AC018892.3-201ENST00000623986 2499 ntBASIC17.67■□□□□ 0.42
TPM4P67936 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
TPM4P67936 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM4P67936 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM4P67936 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TPM4P67936 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TPM4P67936 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.66■□□□□ 0.42
TPM4P67936 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.66■□□□□ 0.42
TPM4P67936 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.66■□□□□ 0.42
TPM4P67936 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
TPM4P67936 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.66■□□□□ 0.42
TPM4P67936 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
TPM4P67936 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.66■□□□□ 0.42
TPM4P67936 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.66■□□□□ 0.42
TPM4P67936 AL445228.2-201ENST00000605589 952 ntBASIC17.66■□□□□ 0.42
TPM4P67936 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.66■□□□□ 0.42
TPM4P67936 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 AC026748.1-201ENST00000624349 3251 ntBASIC17.66■□□□□ 0.42
TPM4P67936 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
TPM4P67936 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
TPM4P67936 GRK6P1-201ENST00000400595 1711 ntBASIC17.66■□□□□ 0.42
TPM4P67936 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
TPM4P67936 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TPM4P67936 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.66■□□□□ 0.42
TPM4P67936 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TPM4P67936 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM4P67936 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.66■□□□□ 0.42
TPM4P67936 AC023024.2-201ENST00000623561 1993 ntBASIC17.66■□□□□ 0.42
TPM4P67936 AC023908.3-201ENST00000564211 3047 ntBASIC17.66■□□□□ 0.42
TPM4P67936 BNIP3P1-202ENST00000550043 1585 ntBASIC17.66■□□□□ 0.42
TPM4P67936 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.66■□□□□ 0.42
TPM4P67936 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.66■□□□□ 0.42
TPM4P67936 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.66■□□□□ 0.42
TPM4P67936 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms