Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.84■□□□□ 0.29
VCPP55072 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.84■□□□□ 0.29
VCPP55072 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.84■□□□□ 0.29
VCPP55072 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.84■□□□□ 0.29
VCPP55072 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.84■□□□□ 0.29
VCPP55072 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.84■□□□□ 0.29
VCPP55072 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC16.84■□□□□ 0.29
VCPP55072 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.84■□□□□ 0.29
VCPP55072 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.84■□□□□ 0.29
VCPP55072 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.84■□□□□ 0.29
VCPP55072 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
VCPP55072 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.84■□□□□ 0.29
VCPP55072 AL079307.3-201ENST00000556114 283 ntBASIC16.84■□□□□ 0.29
VCPP55072 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.84■□□□□ 0.29
VCPP55072 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.84■□□□□ 0.29
VCPP55072 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.84■□□□□ 0.29
VCPP55072 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.84■□□□□ 0.29
VCPP55072 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VCPP55072 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.84■□□□□ 0.29
VCPP55072 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 HYMAI-201ENST00000635591 3347 ntBASIC16.84■□□□□ 0.29
VCPP55072 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.84■□□□□ 0.29
VCPP55072 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VCPP55072 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VCPP55072 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCPP55072 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VCPP55072 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.83■□□□□ 0.29
VCPP55072 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
VCPP55072 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.83■□□□□ 0.29
VCPP55072 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
VCPP55072 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
VCPP55072 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.83■□□□□ 0.28
VCPP55072 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VCPP55072 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
VCPP55072 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.83■□□□□ 0.28
VCPP55072 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VCPP55072 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.83■□□□□ 0.28
VCPP55072 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VCPP55072 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.83■□□□□ 0.28
VCPP55072 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.83■□□□□ 0.28
VCPP55072 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 RN7SL618P-201ENST00000477850 296 ntBASIC16.83■□□□□ 0.28
VCPP55072 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.83■□□□□ 0.28
VCPP55072 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.83■□□□□ 0.28
VCPP55072 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VCPP55072 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.83■□□□□ 0.28
VCPP55072 AL512361.1-201ENST00000554200 418 ntBASIC16.83■□□□□ 0.28
VCPP55072 AC105021.1-202ENST00000570572 669 ntBASIC16.83■□□□□ 0.28
VCPP55072 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.83■□□□□ 0.28
VCPP55072 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.83■□□□□ 0.28
VCPP55072 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.83■□□□□ 0.28
VCPP55072 AL133215.2-201ENST00000609242 977 ntBASIC16.83■□□□□ 0.28
VCPP55072 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.83■□□□□ 0.28
VCPP55072 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.83■□□□□ 0.28
VCPP55072 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
VCPP55072 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
VCPP55072 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCPP55072 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.83■□□□□ 0.28
VCPP55072 AC126177.1-201ENST00000547829 2218 ntBASIC16.82■□□□□ 0.28
VCPP55072 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms