Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.84□□□□□ -0.03
SOX3P41225 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 AC087499.5-201ENST00000452760 1342 ntBASIC14.84□□□□□ -0.03
SOX3P41225 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.84□□□□□ -0.03
SOX3P41225 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.84□□□□□ -0.03
SOX3P41225 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SOX3P41225 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.83□□□□□ -0.03
SOX3P41225 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SOX3P41225 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SOX3P41225 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SOX3P41225 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.83□□□□□ -0.03
SOX3P41225 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SOX3P41225 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SOX3P41225 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
SOX3P41225 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
SOX3P41225 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 AL009178.2-201ENST00000597278 2719 ntBASIC14.83□□□□□ -0.04
SOX3P41225 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 CYP4F24P-201ENST00000586049 1580 ntBASIC14.83□□□□□ -0.04
SOX3P41225 AC022144.1-201ENST00000602255 1580 ntBASIC14.83□□□□□ -0.04
SOX3P41225 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.83□□□□□ -0.04
SOX3P41225 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.83□□□□□ -0.04
SOX3P41225 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.83□□□□□ -0.04
SOX3P41225 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.83□□□□□ -0.04
SOX3P41225 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.83□□□□□ -0.04
SOX3P41225 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.83□□□□□ -0.04
SOX3P41225 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.83□□□□□ -0.04
SOX3P41225 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.83□□□□□ -0.04
SOX3P41225 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.83□□□□□ -0.04
SOX3P41225 AL844908.2-201ENST00000609461 460 ntBASIC14.83□□□□□ -0.04
SOX3P41225 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.83□□□□□ -0.04
SOX3P41225 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.83□□□□□ -0.04
SOX3P41225 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.83□□□□□ -0.04
SOX3P41225 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.83□□□□□ -0.04
SOX3P41225 KRT8P12-202ENST00000472924 1397 ntBASIC14.83□□□□□ -0.04
SOX3P41225 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.83□□□□□ -0.04
SOX3P41225 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.83□□□□□ -0.04
SOX3P41225 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.83□□□□□ -0.04
SOX3P41225 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX3P41225 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
SOX3P41225 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
SOX3P41225 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
SOX3P41225 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.82□□□□□ -0.04
SOX3P41225 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.82□□□□□ -0.04
SOX3P41225 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 SPDYE17-201ENST00000412399 783 ntBASIC14.82□□□□□ -0.04
SOX3P41225 MRPS18AP1-201ENST00000414458 589 ntBASIC14.82□□□□□ -0.04
SOX3P41225 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.82□□□□□ -0.04
SOX3P41225 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.82□□□□□ -0.04
SOX3P41225 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.82□□□□□ -0.04
SOX3P41225 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.82□□□□□ -0.04
SOX3P41225 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms