Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFX1P22670 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFX1P22670 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX1P22670 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.11■□□□□ 0.33
RFX1P22670 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX1P22670 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.11■□□□□ 0.33
RFX1P22670 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RFX1P22670 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFX1P22670 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX1P22670 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RFX1P22670 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.1■□□□□ 0.33
RFX1P22670 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX1P22670 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX1P22670 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RFX1P22670 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 FO393414.2-201ENST00000405153 598 ntBASIC17.1■□□□□ 0.33
RFX1P22670 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.1■□□□□ 0.33
RFX1P22670 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RFX1P22670 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX1P22670 HLA-V-204ENST00000476601 1289 ntBASIC17.1■□□□□ 0.33
RFX1P22670 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 BANF1P1-201ENST00000553684 263 ntBASIC17.1■□□□□ 0.33
RFX1P22670 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX1P22670 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.1■□□□□ 0.33
RFX1P22670 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.1■□□□□ 0.33
RFX1P22670 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.1■□□□□ 0.33
RFX1P22670 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.1■□□□□ 0.33
RFX1P22670 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX1P22670 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
RFX1P22670 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX1P22670 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RFX1P22670 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.09■□□□□ 0.33
RFX1P22670 AC092127.1-201ENST00000567093 3455 ntBASIC17.09■□□□□ 0.33
RFX1P22670 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC17.09■□□□□ 0.33
RFX1P22670 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RFX1P22670 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RFX1P22670 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.09■□□□□ 0.33
RFX1P22670 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RFX1P22670 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.09■□□□□ 0.33
RFX1P22670 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.09■□□□□ 0.33
RFX1P22670 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.09■□□□□ 0.33
RFX1P22670 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.09■□□□□ 0.33
RFX1P22670 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.09■□□□□ 0.33
RFX1P22670 AC097359.3-201ENST00000603982 1210 ntBASIC17.09■□□□□ 0.33
RFX1P22670 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.09■□□□□ 0.33
RFX1P22670 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
RFX1P22670 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.09■□□□□ 0.33
RFX1P22670 AC127383.1-201ENST00000444697 1800 ntBASIC17.09■□□□□ 0.33
RFX1P22670 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.09■□□□□ 0.33
RFX1P22670 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.09■□□□□ 0.33
RFX1P22670 AC023157.3-201ENST00000619086 2088 ntBASIC17.09■□□□□ 0.33
RFX1P22670 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
RFX1P22670 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
RFX1P22670 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
RFX1P22670 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX1P22670 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFX1P22670 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFX1P22670 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms