Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.19■□□□□ 0.5
ERCC3P19447 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.19■□□□□ 0.5
ERCC3P19447 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.19■□□□□ 0.5
ERCC3P19447 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.19■□□□□ 0.5
ERCC3P19447 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.19■□□□□ 0.5
ERCC3P19447 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.19■□□□□ 0.5
ERCC3P19447 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.19■□□□□ 0.5
ERCC3P19447 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
ERCC3P19447 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ERCC3P19447 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.18■□□□□ 0.5
ERCC3P19447 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
ERCC3P19447 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
ERCC3P19447 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
ERCC3P19447 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.18■□□□□ 0.5
ERCC3P19447 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
ERCC3P19447 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 AC093525.8-201ENST00000624099 1342 ntBASIC18.18■□□□□ 0.5
ERCC3P19447 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.18■□□□□ 0.5
ERCC3P19447 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ERCC3P19447 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ERCC3P19447 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.17■□□□□ 0.5
ERCC3P19447 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.17■□□□□ 0.5
ERCC3P19447 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ERCC3P19447 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.17■□□□□ 0.5
ERCC3P19447 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
ERCC3P19447 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.17■□□□□ 0.5
ERCC3P19447 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.17■□□□□ 0.5
ERCC3P19447 CYP2T1P-202ENST00000641596 2535 ntBASIC18.17■□□□□ 0.5
ERCC3P19447 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
ERCC3P19447 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
ERCC3P19447 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.17■□□□□ 0.5
ERCC3P19447 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.17■□□□□ 0.5
ERCC3P19447 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.17■□□□□ 0.5
ERCC3P19447 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.17■□□□□ 0.5
ERCC3P19447 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.17■□□□□ 0.5
ERCC3P19447 KLF2P4-201ENST00000451959 1225 ntBASIC18.17■□□□□ 0.5
ERCC3P19447 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.17■□□□□ 0.5
ERCC3P19447 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.17■□□□□ 0.5
ERCC3P19447 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 AL022328.1-201ENST00000610050 478 ntBASIC18.17■□□□□ 0.5
ERCC3P19447 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.17■□□□□ 0.5
ERCC3P19447 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ERCC3P19447 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms