Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.78■□□□□ 0.6
COL4A1P02462 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 AL645937.2-201ENST00000396808 931 ntBASIC18.78■□□□□ 0.6
COL4A1P02462 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC18.78■□□□□ 0.6
COL4A1P02462 SLC25A24P2-201ENST00000415059 510 ntBASIC18.78■□□□□ 0.6
COL4A1P02462 ACTG1P2-201ENST00000415776 1125 ntBASIC18.78■□□□□ 0.6
COL4A1P02462 ACTG1P11-201ENST00000425411 1125 ntBASIC18.78■□□□□ 0.6
COL4A1P02462 GHSR-202ENST00000427970 912 ntBASIC18.78■□□□□ 0.6
COL4A1P02462 POM121L10P-201ENST00000436994 1285 ntBASIC18.78■□□□□ 0.6
COL4A1P02462 SERPINA13P-202ENST00000478994 924 ntBASIC18.78■□□□□ 0.6
COL4A1P02462 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.78■□□□□ 0.6
COL4A1P02462 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC18.78■□□□□ 0.6
COL4A1P02462 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC18.78■□□□□ 0.6
COL4A1P02462 RN7SL574P-201ENST00000581512 297 ntBASIC18.78■□□□□ 0.6
COL4A1P02462 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.78■□□□□ 0.6
COL4A1P02462 NKG7-204ENST00000595217 816 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
COL4A1P02462 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.78■□□□□ 0.6
COL4A1P02462 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
COL4A1P02462 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A1P02462 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COL4A1P02462 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.77■□□□□ 0.6
COL4A1P02462 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.77■□□□□ 0.6
COL4A1P02462 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COL4A1P02462 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.77■□□□□ 0.6
COL4A1P02462 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 TPM3P8-201ENST00000330554 643 ntBASIC18.77■□□□□ 0.6
COL4A1P02462 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COL4A1P02462 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
COL4A1P02462 RN7SKP175-201ENST00000408472 289 ntBASIC18.77■□□□□ 0.6
COL4A1P02462 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL4A1P02462 FNTAP2-201ENST00000430308 634 ntBASIC18.77■□□□□ 0.6
COL4A1P02462 SPTLC1P5-201ENST00000450718 252 ntBASIC18.77■□□□□ 0.6
COL4A1P02462 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.77■□□□□ 0.6
COL4A1P02462 AC022217.1-201ENST00000521069 738 ntBASIC18.77■□□□□ 0.6
COL4A1P02462 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC18.77■□□□□ 0.6
COL4A1P02462 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC18.77■□□□□ 0.6
COL4A1P02462 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COL4A1P02462 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A1P02462 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A1P02462 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.59
COL4A1P02462 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.77■□□□□ 0.59
COL4A1P02462 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A1P02462 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A1P02462 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A1P02462 CSH2-202ENST00000345366 598 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL4A1P02462 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.76■□□□□ 0.59
COL4A1P02462 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC18.76■□□□□ 0.59
COL4A1P02462 NUS1P3-201ENST00000423502 862 ntBASIC18.76■□□□□ 0.59
COL4A1P02462 IMP3P2-201ENST00000489760 475 ntBASIC18.76■□□□□ 0.59
COL4A1P02462 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A1P02462 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 ZACNP1-201ENST00000612259 710 ntBASIC18.76■□□□□ 0.59
COL4A1P02462 AF254983.2-201ENST00000612331 135 ntBASIC18.76■□□□□ 0.59
COL4A1P02462 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 AC020763.4-201ENST00000623414 4170 ntBASIC18.76■□□□□ 0.59
COL4A1P02462 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms