Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
RHBDD3Q9Y3P4 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RHBDD3Q9Y3P4 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RHBDD3Q9Y3P4 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
RHBDD3Q9Y3P4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 HLA-H-201ENST00000383620 1096 ntBASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 MIR4469-201ENST00000583919 79 ntBASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 AC105339.1-204ENST00000636249 355 ntBASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 AC092127.1-201ENST00000567093 3455 ntBASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RHBDD3Q9Y3P4 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.82□□□□□ -0.2
RHBDD3Q9Y3P4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms