Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 MRPS18AP1-201ENST00000414458 589 ntBASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 AC015922.1-201ENST00000421102 1152 ntBASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 AC114501.2-201ENST00000439631 535 ntBASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 LINC00554-201ENST00000564841 3011 ntBASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 AC144831.1-201ENST00000573312 2656 ntBASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC4Q9NTJ3 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
SMC4Q9NTJ3 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SMC4Q9NTJ3 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
SMC4Q9NTJ3 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 AC112693.3-201ENST00000624819 1983 ntBASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 AQP6-203ENST00000551733 849 ntTSL 3 BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 C18orf15-201ENST00000623680 2534 ntBASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 AC104640.1-201ENST00000562617 2109 ntBASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC20.14■□□□□ 0.81
SMC4Q9NTJ3 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC4Q9NTJ3 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms