Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 MIR648-201ENST00000385046 94 ntBASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 AC112492.5-201ENST00000421897 457 ntBASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 HILS1-202ENST00000545329 423 ntBASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AC017083.2-201ENST00000608069 979 ntBASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 RPSAP52-203ENST00000622976 1023 ntBASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 AL603832.2-201ENST00000566195 2125 ntBASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAIPQ9BWF2 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAIPQ9BWF2 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.21■□□□□ 0.34
TRAIPQ9BWF2 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 AL596257.1-201ENST00000641463 2694 ntBASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 FAM86LP-201ENST00000478302 853 ntBASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 RAB43P1-201ENST00000561790 589 ntBASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms