Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 BX842568.4-201ENST00000421222 227 ntBASIC13.8□□□□□ -0.2
NKX3-1Q99801 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 AC140658.5-201ENST00000438532 169 ntBASIC13.8□□□□□ -0.2
NKX3-1Q99801 FIS1-203ENST00000442303 631 ntTSL 3 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 AL591424.1-201ENST00000442569 1213 ntBASIC13.8□□□□□ -0.2
NKX3-1Q99801 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 NMU-203ENST00000507338 658 ntTSL 3 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 AL365330.1-201ENST00000607459 531 ntBASIC13.8□□□□□ -0.2
NKX3-1Q99801 GPALPP1-207ENST00000611650 899 ntBASIC13.8□□□□□ -0.2
NKX3-1Q99801 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 KRT19P2-202ENST00000557173 1012 ntBASIC13.79□□□□□ -0.2
NKX3-1Q99801 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 FHL2-212ENST00000607522 759 ntTSL 2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 AC064836.3-201ENST00000607928 673 ntBASIC13.79□□□□□ -0.2
NKX3-1Q99801 FAM197Y3-203ENST00000618346 717 ntBASIC13.79□□□□□ -0.2
NKX3-1Q99801 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms