Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 CYP4F24P-201ENST00000586049 1580 ntBASIC17.01■□□□□ 0.31
CCDC42Q96M95 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17■□□□□ 0.31
CCDC42Q96M95 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
CCDC42Q96M95 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17■□□□□ 0.31
CCDC42Q96M95 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17■□□□□ 0.31
CCDC42Q96M95 AL355306.1-201ENST00000415580 579 ntBASIC17■□□□□ 0.31
CCDC42Q96M95 HNRNPA1P28-201ENST00000424481 961 ntBASIC17■□□□□ 0.31
CCDC42Q96M95 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17■□□□□ 0.31
CCDC42Q96M95 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17■□□□□ 0.31
CCDC42Q96M95 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.31
CCDC42Q96M95 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17■□□□□ 0.31
CCDC42Q96M95 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17■□□□□ 0.31
CCDC42Q96M95 LINC00528-201ENST00000600723 2160 ntBASIC17■□□□□ 0.31
CCDC42Q96M95 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17■□□□□ 0.31
CCDC42Q96M95 AC092865.6-201ENST00000642101 219 ntBASIC17■□□□□ 0.31
CCDC42Q96M95 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
CCDC42Q96M95 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CCDC42Q96M95 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17■□□□□ 0.31
CCDC42Q96M95 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17■□□□□ 0.31
CCDC42Q96M95 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC42Q96M95 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 AC023908.3-201ENST00000564211 3047 ntBASIC16.99■□□□□ 0.31
CCDC42Q96M95 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.99■□□□□ 0.31
CCDC42Q96M95 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 FAM86C2P-203ENST00000528684 1004 ntBASIC16.99■□□□□ 0.31
CCDC42Q96M95 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms