Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LRCH3Q96II8 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.92■□□□□ 0.3
LRCH3Q96II8 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LRCH3Q96II8 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.91■□□□□ 0.3
LRCH3Q96II8 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 IGLV3-15-201ENST00000518356 244 ntBASIC16.91■□□□□ 0.3
LRCH3Q96II8 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 AC013467.2-201ENST00000605472 835 ntBASIC16.91■□□□□ 0.3
LRCH3Q96II8 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 AL805961.1-201ENST00000642026 753 ntBASIC16.91■□□□□ 0.3
LRCH3Q96II8 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.91■□□□□ 0.3
LRCH3Q96II8 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 AL354989.2-201ENST00000435838 1540 ntBASIC16.91■□□□□ 0.3
LRCH3Q96II8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRCH3Q96II8 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 AL512430.1-201ENST00000392575 860 ntBASIC16.9■□□□□ 0.3
LRCH3Q96II8 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 CEP164P1-201ENST00000455142 418 ntBASIC16.9■□□□□ 0.3
LRCH3Q96II8 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 PPY2P-201ENST00000582808 702 ntBASIC16.9■□□□□ 0.3
LRCH3Q96II8 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 ECM1P1-201ENST00000604092 1279 ntBASIC16.9■□□□□ 0.3
LRCH3Q96II8 AC092171.5-201ENST00000608012 942 ntBASIC16.9■□□□□ 0.3
LRCH3Q96II8 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 AC103691.2-201ENST00000618824 433 ntBASIC16.9■□□□□ 0.3
LRCH3Q96II8 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRCH3Q96II8 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.9■□□□□ 0.3
LRCH3Q96II8 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
LRCH3Q96II8 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.89■□□□□ 0.3
LRCH3Q96II8 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.89■□□□□ 0.3
LRCH3Q96II8 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LRCH3Q96II8 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.89■□□□□ 0.3
LRCH3Q96II8 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LRCH3Q96II8 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.89■□□□□ 0.29
LRCH3Q96II8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LRCH3Q96II8 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
LRCH3Q96II8 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LRCH3Q96II8 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LRCH3Q96II8 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.89■□□□□ 0.29
LRCH3Q96II8 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms