Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 SNX18-202ENST00000343017 3140 ntBASIC15.15■□□□□ 0.02
VMP1Q96GC9 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 GRK6P1-201ENST00000400595 1711 ntBASIC15.15■□□□□ 0.02
VMP1Q96GC9 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 AC140878.1-201ENST00000565277 250 ntBASIC15.15■□□□□ 0.02
VMP1Q96GC9 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VMP1Q96GC9 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
VMP1Q96GC9 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 AC023908.3-201ENST00000564211 3047 ntBASIC15.14■□□□□ 0.01
VMP1Q96GC9 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 AL355385.1-201ENST00000606123 409 ntBASIC15.14■□□□□ 0.01
VMP1Q96GC9 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
VMP1Q96GC9 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.14■□□□□ 0.01
VMP1Q96GC9 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VMP1Q96GC9 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms