Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.41■□□□□ 0.38
HPS3Q969F9 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.41■□□□□ 0.38
HPS3Q969F9 AC023157.3-201ENST00000619086 2088 ntBASIC17.41■□□□□ 0.38
HPS3Q969F9 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.41■□□□□ 0.38
HPS3Q969F9 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.41■□□□□ 0.38
HPS3Q969F9 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.41■□□□□ 0.38
HPS3Q969F9 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.41■□□□□ 0.38
HPS3Q969F9 AL645939.2-201ENST00000427340 991 ntBASIC17.41■□□□□ 0.38
HPS3Q969F9 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.41■□□□□ 0.38
HPS3Q969F9 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.41■□□□□ 0.38
HPS3Q969F9 SERBP1P3-201ENST00000459980 809 ntBASIC17.41■□□□□ 0.38
HPS3Q969F9 RN7SL618P-201ENST00000477850 296 ntBASIC17.41■□□□□ 0.38
HPS3Q969F9 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.41■□□□□ 0.38
HPS3Q969F9 AC067863.1-201ENST00000494933 530 ntBASIC17.41■□□□□ 0.38
HPS3Q969F9 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.41■□□□□ 0.38
HPS3Q969F9 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.41■□□□□ 0.38
HPS3Q969F9 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.41■□□□□ 0.38
HPS3Q969F9 AL158211.3-201ENST00000607385 239 ntBASIC17.41■□□□□ 0.38
HPS3Q969F9 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.41■□□□□ 0.38
HPS3Q969F9 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.41■□□□□ 0.38
HPS3Q969F9 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.41■□□□□ 0.38
HPS3Q969F9 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.41■□□□□ 0.38
HPS3Q969F9 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HPS3Q969F9 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.41■□□□□ 0.38
HPS3Q969F9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HPS3Q969F9 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
HPS3Q969F9 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HPS3Q969F9 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.4■□□□□ 0.38
HPS3Q969F9 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.4■□□□□ 0.38
HPS3Q969F9 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.4■□□□□ 0.38
HPS3Q969F9 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.4■□□□□ 0.38
HPS3Q969F9 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
HPS3Q969F9 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
HPS3Q969F9 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.4■□□□□ 0.38
HPS3Q969F9 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.4■□□□□ 0.38
HPS3Q969F9 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HPS3Q969F9 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.4■□□□□ 0.38
HPS3Q969F9 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.4■□□□□ 0.38
HPS3Q969F9 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.4■□□□□ 0.38
HPS3Q969F9 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.4■□□□□ 0.38
HPS3Q969F9 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HPS3Q969F9 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HPS3Q969F9 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
HPS3Q969F9 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HPS3Q969F9 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HPS3Q969F9 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HPS3Q969F9 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HPS3Q969F9 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HPS3Q969F9 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
HPS3Q969F9 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HPS3Q969F9 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HPS3Q969F9 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HPS3Q969F9 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.39■□□□□ 0.37
HPS3Q969F9 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.39■□□□□ 0.37
HPS3Q969F9 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
HPS3Q969F9 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.39■□□□□ 0.37
HPS3Q969F9 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.39■□□□□ 0.37
HPS3Q969F9 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.39■□□□□ 0.37
HPS3Q969F9 RPL13P2-201ENST00000440687 659 ntBASIC17.39■□□□□ 0.37
HPS3Q969F9 AC009407.1-201ENST00000568958 598 ntBASIC17.39■□□□□ 0.37
HPS3Q969F9 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.39■□□□□ 0.37
HPS3Q969F9 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms