Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 KRT8P48-201ENST00000515599 1220 ntBASIC17.9■□□□□ 0.46
ERCC4Q92889 RNA5SP410-201ENST00000516285 106 ntBASIC17.9■□□□□ 0.46
ERCC4Q92889 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.9■□□□□ 0.46
ERCC4Q92889 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
ERCC4Q92889 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.9■□□□□ 0.46
ERCC4Q92889 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC17.9■□□□□ 0.46
ERCC4Q92889 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ERCC4Q92889 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.9■□□□□ 0.46
ERCC4Q92889 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
ERCC4Q92889 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 AL009178.2-201ENST00000597278 2719 ntBASIC17.9■□□□□ 0.46
ERCC4Q92889 ZNF259P1-201ENST00000407656 1365 ntBASIC17.9■□□□□ 0.46
ERCC4Q92889 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.9■□□□□ 0.46
ERCC4Q92889 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
ERCC4Q92889 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
ERCC4Q92889 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
ERCC4Q92889 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
ERCC4Q92889 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
ERCC4Q92889 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 ADH5P3-201ENST00000433842 1137 ntBASIC17.89■□□□□ 0.45
ERCC4Q92889 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
ERCC4Q92889 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.89■□□□□ 0.45
ERCC4Q92889 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 AC243562.2-201ENST00000561247 970 ntBASIC17.89■□□□□ 0.45
ERCC4Q92889 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.89■□□□□ 0.45
ERCC4Q92889 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.89■□□□□ 0.45
ERCC4Q92889 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
ERCC4Q92889 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
ERCC4Q92889 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ERCC4Q92889 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
ERCC4Q92889 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
ERCC4Q92889 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
ERCC4Q92889 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 AGAP7P-201ENST00000582299 2062 ntBASIC17.88■□□□□ 0.45
ERCC4Q92889 AGAP14-201ENST00000624701 2060 ntBASIC17.88■□□□□ 0.45
ERCC4Q92889 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
ERCC4Q92889 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.88■□□□□ 0.45
ERCC4Q92889 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.88■□□□□ 0.45
ERCC4Q92889 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 MIR940-201ENST00000401276 94 ntBASIC17.88■□□□□ 0.45
ERCC4Q92889 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.88■□□□□ 0.45
ERCC4Q92889 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.88■□□□□ 0.45
ERCC4Q92889 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.88■□□□□ 0.45
ERCC4Q92889 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.88■□□□□ 0.45
ERCC4Q92889 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.88■□□□□ 0.45
ERCC4Q92889 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.88■□□□□ 0.45
ERCC4Q92889 AC027601.4-201ENST00000611259 610 ntBASIC17.88■□□□□ 0.45
ERCC4Q92889 AC008267.7-201ENST00000624570 1194 ntBASIC17.88■□□□□ 0.45
ERCC4Q92889 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
ERCC4Q92889 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 CICP23-201ENST00000605013 2741 ntBASIC17.88■□□□□ 0.45
ERCC4Q92889 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
ERCC4Q92889 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
ERCC4Q92889 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.88■□□□□ 0.45
ERCC4Q92889 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
ERCC4Q92889 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.88■□□□□ 0.45
ERCC4Q92889 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ERCC4Q92889 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms