Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.72■□□□□ 0.11
HMGB4Q8WW32 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 GNRHR2-203ENST00000581100 1187 ntBASIC15.72■□□□□ 0.11
HMGB4Q8WW32 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB4Q8WW32 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 ACKR1-201ENST00000368121 1240 ntBASIC15.71■□□□□ 0.11
HMGB4Q8WW32 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 AC084346.2-201ENST00000607097 949 ntBASIC15.71■□□□□ 0.11
HMGB4Q8WW32 AC091271.1-201ENST00000611877 1162 ntBASIC15.71■□□□□ 0.11
HMGB4Q8WW32 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HMGB4Q8WW32 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.71■□□□□ 0.1
HMGB4Q8WW32 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB4Q8WW32 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.71■□□□□ 0.1
HMGB4Q8WW32 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB4Q8WW32 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB4Q8WW32 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.71■□□□□ 0.1
HMGB4Q8WW32 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB4Q8WW32 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB4Q8WW32 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB4Q8WW32 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.7■□□□□ 0.1
HMGB4Q8WW32 AC103810.3-201ENST00000583567 96 ntBASIC15.7■□□□□ 0.1
HMGB4Q8WW32 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms