Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 AC079178.1-201ENST00000420915 656 ntBASIC12.8□□□□□ -0.36
VPS13CQ709C8 AL391280.1-201ENST00000506969 1062 ntBASIC12.8□□□□□ -0.36
VPS13CQ709C8 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 SDHD-202ENST00000525291 790 ntTSL 3 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 AC006335.1-201ENST00000445200 547 ntBASIC12.8□□□□□ -0.36
VPS13CQ709C8 PHKG1P2-201ENST00000457537 863 ntBASIC12.8□□□□□ -0.36
VPS13CQ709C8 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 AL133267.1-201ENST00000398220 340 ntBASIC12.8□□□□□ -0.36
VPS13CQ709C8 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 MEG3_2.1-201ENST00000611456 105 ntBASIC12.8□□□□□ -0.36
VPS13CQ709C8 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13CQ709C8 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13CQ709C8 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 RPSAP31-201ENST00000416648 895 ntBASIC12.79□□□□□ -0.36
VPS13CQ709C8 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 RPL35-206ENST00000629845 340 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 AL805961.1-203ENST00000641078 1258 ntBASIC12.79□□□□□ -0.36
VPS13CQ709C8 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 AL161670.2-201ENST00000557650 1227 ntBASIC12.79□□□□□ -0.36
VPS13CQ709C8 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 AC007663.3-201ENST00000609632 465 ntBASIC12.79□□□□□ -0.36
VPS13CQ709C8 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 COX6A1P2-201ENST00000620597 330 ntBASIC12.79□□□□□ -0.36
VPS13CQ709C8 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13CQ709C8 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS13CQ709C8 AC092850.2-201ENST00000623821 2697 ntBASIC12.79□□□□□ -0.36
VPS13CQ709C8 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms