Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC4P56524 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.45■□□□□ 0.22
HDAC4P56524 AC241585.1-201ENST00000433527 519 ntBASIC16.45■□□□□ 0.22
HDAC4P56524 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.45■□□□□ 0.22
HDAC4P56524 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.45■□□□□ 0.22
HDAC4P56524 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
HDAC4P56524 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC4P56524 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC4P56524 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC4P56524 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HDAC4P56524 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC4P56524 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
HDAC4P56524 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HDAC4P56524 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HDAC4P56524 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 AC073347.1-201ENST00000421633 2643 ntBASIC16.44■□□□□ 0.22
HDAC4P56524 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HDAC4P56524 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.44■□□□□ 0.22
HDAC4P56524 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.44■□□□□ 0.22
HDAC4P56524 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.44■□□□□ 0.22
HDAC4P56524 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.44■□□□□ 0.22
HDAC4P56524 IGHV3-42-201ENST00000520410 361 ntBASIC16.44■□□□□ 0.22
HDAC4P56524 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.44■□□□□ 0.22
HDAC4P56524 ZNF890P-202ENST00000530367 1156 ntBASIC16.44■□□□□ 0.22
HDAC4P56524 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
HDAC4P56524 AL390754.1-201ENST00000619088 582 ntBASIC16.44■□□□□ 0.22
HDAC4P56524 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC4P56524 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.44■□□□□ 0.22
HDAC4P56524 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC4P56524 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.43■□□□□ 0.22
HDAC4P56524 AC013268.4-201ENST00000637413 2228 ntBASIC16.43■□□□□ 0.22
HDAC4P56524 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC4P56524 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.43■□□□□ 0.22
HDAC4P56524 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HDAC4P56524 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.43■□□□□ 0.22
HDAC4P56524 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC4P56524 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC4P56524 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.43■□□□□ 0.22
HDAC4P56524 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.43■□□□□ 0.22
HDAC4P56524 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.43■□□□□ 0.22
HDAC4P56524 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.43■□□□□ 0.22
HDAC4P56524 KRT18P64-201ENST00000434946 1219 ntBASIC16.43■□□□□ 0.22
HDAC4P56524 AC009477.1-201ENST00000452936 217 ntBASIC16.43■□□□□ 0.22
HDAC4P56524 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.43■□□□□ 0.22
HDAC4P56524 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC4P56524 AC044860.1-202ENST00000559481 777 ntBASIC16.43■□□□□ 0.22
HDAC4P56524 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.43■□□□□ 0.22
HDAC4P56524 AC005498.2-205ENST00000593218 784 ntBASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms