Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
GFRA1P56159 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
GFRA1P56159 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
GFRA1P56159 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
GFRA1P56159 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
GFRA1P56159 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
GFRA1P56159 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.02□□□□□ -0.16
GFRA1P56159 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
GFRA1P56159 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
GFRA1P56159 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
GFRA1P56159 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
GFRA1P56159 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.02□□□□□ -0.16
GFRA1P56159 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
GFRA1P56159 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
GFRA1P56159 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
GFRA1P56159 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.02□□□□□ -0.16
GFRA1P56159 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.02□□□□□ -0.16
GFRA1P56159 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.02□□□□□ -0.16
GFRA1P56159 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.02□□□□□ -0.17
GFRA1P56159 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 C1QBPP1-201ENST00000400117 770 ntBASIC14.02□□□□□ -0.17
GFRA1P56159 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.02□□□□□ -0.17
GFRA1P56159 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 AC007389.4-201ENST00000454674 793 ntBASIC14.02□□□□□ -0.17
GFRA1P56159 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.02□□□□□ -0.17
GFRA1P56159 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.02□□□□□ -0.17
GFRA1P56159 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.02□□□□□ -0.17
GFRA1P56159 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.02□□□□□ -0.17
GFRA1P56159 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.02□□□□□ -0.17
GFRA1P56159 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.02□□□□□ -0.17
GFRA1P56159 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.02□□□□□ -0.17
GFRA1P56159 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.02□□□□□ -0.17
GFRA1P56159 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
GFRA1P56159 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.02□□□□□ -0.17
GFRA1P56159 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.02□□□□□ -0.17
GFRA1P56159 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.02□□□□□ -0.17
GFRA1P56159 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 CU634019.7-201ENST00000624153 1185 ntBASIC14.02□□□□□ -0.17
GFRA1P56159 FP236241.2-201ENST00000624906 1185 ntBASIC14.02□□□□□ -0.17
GFRA1P56159 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.02□□□□□ -0.17
GFRA1P56159 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
GFRA1P56159 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
GFRA1P56159 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
GFRA1P56159 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.02□□□□□ -0.17
GFRA1P56159 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.02□□□□□ -0.17
GFRA1P56159 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
GFRA1P56159 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
GFRA1P56159 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.02□□□□□ -0.17
GFRA1P56159 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.02□□□□□ -0.17
GFRA1P56159 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
GFRA1P56159 AC022188.1-201ENST00000620960 1664 ntBASIC14.01□□□□□ -0.17
GFRA1P56159 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.01□□□□□ -0.17
GFRA1P56159 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
GFRA1P56159 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 PRAL-201ENST00000624952 3286 ntBASIC14.01□□□□□ -0.17
GFRA1P56159 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
GFRA1P56159 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.01□□□□□ -0.17
GFRA1P56159 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.01□□□□□ -0.17
GFRA1P56159 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.01□□□□□ -0.17
GFRA1P56159 TTTY23B-201ENST00000442790 549 ntBASIC14.01□□□□□ -0.17
GFRA1P56159 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.01□□□□□ -0.17
GFRA1P56159 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.01□□□□□ -0.17
GFRA1P56159 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.01□□□□□ -0.17
GFRA1P56159 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.01□□□□□ -0.17
GFRA1P56159 AC010319.3-201ENST00000597028 470 ntBASIC14.01□□□□□ -0.17
GFRA1P56159 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.01□□□□□ -0.17
GFRA1P56159 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
GFRA1P56159 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
GFRA1P56159 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms