Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC11.89□□□□□ -0.51
FOXA3P55318 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
FOXA3P55318 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
FOXA3P55318 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 TKT-202ENST00000423516 2075 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
FOXA3P55318 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
FOXA3P55318 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
FOXA3P55318 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA3P55318 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA3P55318 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
FOXA3P55318 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 PPIH-202ENST00000372549 327 ntTSL 3 BASIC11.88□□□□□ -0.51
FOXA3P55318 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC11.88□□□□□ -0.51
FOXA3P55318 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC11.88□□□□□ -0.51
FOXA3P55318 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 FXN-203ENST00000396366 922 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
FOXA3P55318 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC11.88□□□□□ -0.51
FOXA3P55318 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 ARTN-206ENST00000472435 402 ntTSL 3 BASIC11.88□□□□□ -0.51
FOXA3P55318 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 DET1-205ENST00000558413 583 ntTSL 4 BASIC11.88□□□□□ -0.51
FOXA3P55318 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 RBM42-202ENST00000586618 771 ntTSL 3 BASIC11.88□□□□□ -0.51
FOXA3P55318 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC11.88□□□□□ -0.51
FOXA3P55318 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC11.88□□□□□ -0.51
FOXA3P55318 AC004706.3-202ENST00000621574 984 ntBASIC11.88□□□□□ -0.51
FOXA3P55318 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 STK40-201ENST00000359297 4837 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC11.88□□□□□ -0.51
FOXA3P55318 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC11.88□□□□□ -0.51
FOXA3P55318 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 ZBED1P1-201ENST00000502364 1930 ntBASIC11.88□□□□□ -0.51
FOXA3P55318 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
FOXA3P55318 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
FOXA3P55318 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 AC009090.5-201ENST00000624886 2285 ntBASIC11.87□□□□□ -0.51
FOXA3P55318 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
FOXA3P55318 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC11.87□□□□□ -0.51
FOXA3P55318 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms