Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 OR7E14P-202ENST00000530490 1290 ntBASIC15.08■□□□□ 0
MSX2P35548 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.08■□□□□ 0
MSX2P35548 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.08■□□□□ 0
MSX2P35548 AC093458.2-201ENST00000623150 629 ntBASIC15.08■□□□□ 0
MSX2P35548 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
MSX2P35548 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.08■□□□□ 0
MSX2P35548 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 AC006504.5-208ENST00000588784 2401 ntBASIC15.08■□□□□ 0
MSX2P35548 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
MSX2P35548 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
MSX2P35548 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 SBF1P1-201ENST00000444527 5631 ntBASIC15.08■□□□□ 0
MSX2P35548 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 AC097376.2-205ENST00000610159 5334 ntBASIC15.08■□□□□ 0
MSX2P35548 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
MSX2P35548 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC15.08■□□□□ 0
MSX2P35548 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
MSX2P35548 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
MSX2P35548 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
MSX2P35548 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
MSX2P35548 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.07■□□□□ 0
MSX2P35548 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.07■□□□□ 0
MSX2P35548 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.07■□□□□ 0
MSX2P35548 AC107918.4-201ENST00000641966 3141 ntBASIC15.07■□□□□ 0
MSX2P35548 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
MSX2P35548 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
MSX2P35548 AL513480.1-201ENST00000451731 511 ntBASIC15.07■□□□□ 0
MSX2P35548 AC108073.2-201ENST00000464002 357 ntBASIC15.07■□□□□ 0
MSX2P35548 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.07■□□□□ 0
MSX2P35548 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
MSX2P35548 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.07■□□□□ 0
MSX2P35548 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.07■□□□□ 0
MSX2P35548 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.07■□□□□ 0
MSX2P35548 CLEC4GP1-201ENST00000596555 870 ntBASIC15.07■□□□□ 0
MSX2P35548 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.07■□□□□ 0
MSX2P35548 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.07■□□□□ 0
MSX2P35548 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.07■□□□□ 0
MSX2P35548 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.07■□□□□ 0
MSX2P35548 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.07■□□□□ 0
MSX2P35548 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSX2P35548 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.07■□□□□ 0
MSX2P35548 BNIP3P1-202ENST00000550043 1585 ntBASIC15.07■□□□□ 0
MSX2P35548 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.06■□□□□ 0
MSX2P35548 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.06■□□□□ 0
MSX2P35548 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
MSX2P35548 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
MSX2P35548 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 KRT18P34-201ENST00000488218 1270 ntBASIC15.06■□□□□ 0
MSX2P35548 CXCL1P1-201ENST00000502804 216 ntBASIC15.06■□□□□ 0
MSX2P35548 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.06■□□□□ 0
MSX2P35548 AF238378.1-201ENST00000526806 358 ntBASIC15.06■□□□□ 0
MSX2P35548 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.06■□□□□ 0
MSX2P35548 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.06■□□□□ 0
MSX2P35548 AL031432.2-201ENST00000566714 459 ntBASIC15.06■□□□□ 0
MSX2P35548 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
MSX2P35548 AL928711.1-201ENST00000570165 459 ntBASIC15.06■□□□□ 0
MSX2P35548 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 AL356488.2-201ENST00000602755 427 ntBASIC15.06■□□□□ 0
MSX2P35548 REXO1L6P-202ENST00000619970 1078 ntBASIC15.06■□□□□ 0
MSX2P35548 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.06■□□□□ 0
MSX2P35548 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.06■□□□□ 0
MSX2P35548 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
MSX2P35548 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms