Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
COL8A1P27658 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL8A1P27658 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC13.71□□□□□ -0.21
COL8A1P27658 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.71□□□□□ -0.21
COL8A1P27658 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 COX5BP1-201ENST00000507622 393 ntBASIC13.71□□□□□ -0.21
COL8A1P27658 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.71□□□□□ -0.21
COL8A1P27658 AP001582.1-201ENST00000525856 295 ntBASIC13.71□□□□□ -0.21
COL8A1P27658 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.71□□□□□ -0.21
COL8A1P27658 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC13.71□□□□□ -0.21
COL8A1P27658 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.71□□□□□ -0.21
COL8A1P27658 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.71□□□□□ -0.21
COL8A1P27658 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC13.71□□□□□ -0.21
COL8A1P27658 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC13.71□□□□□ -0.21
COL8A1P27658 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL8A1P27658 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC13.71□□□□□ -0.21
COL8A1P27658 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.71□□□□□ -0.22
COL8A1P27658 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL8A1P27658 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL8A1P27658 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
COL8A1P27658 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL8A1P27658 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.71□□□□□ -0.22
COL8A1P27658 AP001094.4-201ENST00000579008 2176 ntBASIC13.71□□□□□ -0.22
COL8A1P27658 GPAA1P2-202ENST00000606848 1787 ntBASIC13.71□□□□□ -0.22
COL8A1P27658 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.71□□□□□ -0.22
COL8A1P27658 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL8A1P27658 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL8A1P27658 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.7□□□□□ -0.22
COL8A1P27658 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.7□□□□□ -0.22
COL8A1P27658 AC016700.1-201ENST00000429424 312 ntBASIC13.7□□□□□ -0.22
COL8A1P27658 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 NKAIN1P1-201ENST00000435754 582 ntBASIC13.7□□□□□ -0.22
COL8A1P27658 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 MAGEA5-201ENST00000446757 942 ntBASIC13.7□□□□□ -0.22
COL8A1P27658 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.7□□□□□ -0.22
COL8A1P27658 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC13.7□□□□□ -0.22
COL8A1P27658 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.7□□□□□ -0.22
COL8A1P27658 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.7□□□□□ -0.22
COL8A1P27658 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.7□□□□□ -0.22
COL8A1P27658 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.7□□□□□ -0.22
COL8A1P27658 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 U82695.1-201ENST00000635752 1889 ntBASIC13.7□□□□□ -0.22
COL8A1P27658 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL8A1P27658 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.69□□□□□ -0.22
COL8A1P27658 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms