Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 AC092127.1-201ENST00000567093 3455 ntBASIC16.54■□□□□ 0.24
BDNFP23560 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 AL442647.2-201ENST00000429864 857 ntBASIC16.54■□□□□ 0.24
BDNFP23560 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.54■□□□□ 0.24
BDNFP23560 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.54■□□□□ 0.24
BDNFP23560 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.54■□□□□ 0.24
BDNFP23560 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.54■□□□□ 0.24
BDNFP23560 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 AL359711.2-201ENST00000563105 872 ntBASIC16.54■□□□□ 0.24
BDNFP23560 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.54■□□□□ 0.24
BDNFP23560 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.54■□□□□ 0.24
BDNFP23560 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.54■□□□□ 0.24
BDNFP23560 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.54■□□□□ 0.24
BDNFP23560 AC000095.1-201ENST00000603208 874 ntBASIC16.54■□□□□ 0.24
BDNFP23560 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 AC133539.2-201ENST00000604757 467 ntBASIC16.54■□□□□ 0.24
BDNFP23560 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.54■□□□□ 0.24
BDNFP23560 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 CICP13-201ENST00000422015 2789 ntBASIC16.54■□□□□ 0.24
BDNFP23560 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.53■□□□□ 0.24
BDNFP23560 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
BDNFP23560 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.53■□□□□ 0.24
BDNFP23560 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
BDNFP23560 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 AL133267.1-201ENST00000398220 340 ntBASIC16.53■□□□□ 0.24
BDNFP23560 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.53■□□□□ 0.24
BDNFP23560 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.53■□□□□ 0.24
BDNFP23560 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.53■□□□□ 0.24
BDNFP23560 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.53■□□□□ 0.24
BDNFP23560 AC015910.1-201ENST00000579400 975 ntBASIC16.53■□□□□ 0.24
BDNFP23560 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.53■□□□□ 0.24
BDNFP23560 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
BDNFP23560 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BDNFP23560 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
BDNFP23560 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.53■□□□□ 0.24
BDNFP23560 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
BDNFP23560 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.53■□□□□ 0.24
BDNFP23560 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.53■□□□□ 0.24
BDNFP23560 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
BDNFP23560 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.53■□□□□ 0.24
BDNFP23560 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
BDNFP23560 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.53■□□□□ 0.24
BDNFP23560 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BDNFP23560 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.52■□□□□ 0.24
BDNFP23560 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
BDNFP23560 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
BDNFP23560 AL365203.3-201ENST00000609742 2057 ntBASIC16.52■□□□□ 0.24
BDNFP23560 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
BDNFP23560 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
BDNFP23560 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.52■□□□□ 0.24
BDNFP23560 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
BDNFP23560 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
BDNFP23560 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.52■□□□□ 0.24
BDNFP23560 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BDNFP23560 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BDNFP23560 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
BDNFP23560 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.52■□□□□ 0.24
BDNFP23560 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
BDNFP23560 AC134915.1-201ENST00000426461 574 ntBASIC16.52■□□□□ 0.24
BDNFP23560 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.52■□□□□ 0.24
BDNFP23560 VDAC1P7-201ENST00000462417 847 ntBASIC16.52■□□□□ 0.24
BDNFP23560 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.52■□□□□ 0.24
BDNFP23560 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.52■□□□□ 0.24
BDNFP23560 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms