Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC20.39■□□□□ 0.85
COL3A1P02461 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 AL008721.1-201ENST00000609964 604 ntBASIC20.39■□□□□ 0.85
COL3A1P02461 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.39■□□□□ 0.85
COL3A1P02461 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
COL3A1P02461 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC20.39■□□□□ 0.85
COL3A1P02461 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.39■□□□□ 0.85
COL3A1P02461 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
COL3A1P02461 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC20.39■□□□□ 0.85
COL3A1P02461 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC20.39■□□□□ 0.85
COL3A1P02461 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL3A1P02461 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL3A1P02461 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL3A1P02461 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL3A1P02461 GZMB-202ENST00000382540 816 ntTSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC20.38■□□□□ 0.85
COL3A1P02461 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 OLR1-203ENST00000432556 950 ntTSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC20.38■□□□□ 0.85
COL3A1P02461 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 KLF2P4-201ENST00000451959 1225 ntBASIC20.38■□□□□ 0.85
COL3A1P02461 FO681548.1-201ENST00000455617 1132 ntBASIC20.38■□□□□ 0.85
COL3A1P02461 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL3A1P02461 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 LARP4-220ENST00000615080 856 ntTSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 MIR6752-201ENST00000618442 71 ntBASIC20.38■□□□□ 0.85
COL3A1P02461 AC138951.2-201ENST00000623455 1161 ntBASIC20.38■□□□□ 0.85
COL3A1P02461 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL3A1P02461 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL3A1P02461 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 AC013268.4-201ENST00000637413 2228 ntBASIC20.38■□□□□ 0.85
COL3A1P02461 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.38■□□□□ 0.85
COL3A1P02461 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
COL3A1P02461 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL3A1P02461 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC20.38■□□□□ 0.85
COL3A1P02461 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC20.37■□□□□ 0.85
COL3A1P02461 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC20.37■□□□□ 0.85
COL3A1P02461 AC114812.1-204ENST00000449669 728 ntBASIC20.37■□□□□ 0.85
COL3A1P02461 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC20.37■□□□□ 0.85
COL3A1P02461 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 INO80C-210ENST00000590757 595 ntTSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL3A1P02461 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 AL360270.3-201ENST00000609118 1348 ntBASIC20.37■□□□□ 0.85
COL3A1P02461 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC20.37■□□□□ 0.85
COL3A1P02461 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC20.37■□□□□ 0.85
COL3A1P02461 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL3A1P02461 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL3A1P02461 RPS2P32-201ENST00000439199 892 ntBASIC20.37■□□□□ 0.85
COL3A1P02461 CSF2RBP1-201ENST00000447905 391 ntBASIC20.37■□□□□ 0.85
COL3A1P02461 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC20.37■□□□□ 0.85
COL3A1P02461 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC20.37■□□□□ 0.85
COL3A1P02461 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC20.37■□□□□ 0.85
COL3A1P02461 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
COL3A1P02461 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC20.37■□□□□ 0.85
COL3A1P02461 AC133552.6-201ENST00000613406 534 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms