Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC19.8■□□□□ 0.76
NPHP1O15259 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
NPHP1O15259 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.8■□□□□ 0.76
NPHP1O15259 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP1O15259 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
NPHP1O15259 AP001094.4-201ENST00000579008 2176 ntBASIC19.8■□□□□ 0.76
NPHP1O15259 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 AC079328.2-201ENST00000561241 3354 ntBASIC19.8■□□□□ 0.76
NPHP1O15259 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP1O15259 PCDH8P1-201ENST00000428983 2773 ntBASIC19.79■□□□□ 0.76
NPHP1O15259 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP1O15259 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
NPHP1O15259 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.79■□□□□ 0.76
NPHP1O15259 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
NPHP1O15259 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 RHOXF1P1-202ENST00000635473 501 ntBASIC19.79■□□□□ 0.76
NPHP1O15259 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP1O15259 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP1O15259 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.79■□□□□ 0.76
NPHP1O15259 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP1O15259 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP1O15259 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP1O15259 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 AC005052.1-201ENST00000625181 2492 ntBASIC19.78■□□□□ 0.76
NPHP1O15259 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP1O15259 REXO1L1P-202ENST00000608646 1974 ntBASIC19.78■□□□□ 0.76
NPHP1O15259 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP1O15259 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
NPHP1O15259 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP1O15259 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 RPL13AP20-201ENST00000459725 609 ntBASIC19.78■□□□□ 0.76
NPHP1O15259 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP1O15259 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP1O15259 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP1O15259 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 AC005252.2-201ENST00000624630 1141 ntBASIC19.78■□□□□ 0.76
NPHP1O15259 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP1O15259 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP1O15259 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP1O15259 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP1O15259 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms