Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AC241585.1-201ENST00000433527 519 ntBASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 SLED1-202ENST00000512051 380 ntBASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AC074044.1-201ENST00000609673 707 ntBASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
AP4E1Q9UPM8 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
AP4E1Q9UPM8 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 TSSK5P-201ENST00000423978 907 ntBASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 AC055876.3-201ENST00000431496 288 ntBASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 KRT18P64-201ENST00000434946 1219 ntBASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 SDHAP3-202ENST00000515467 728 ntBASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 AC044860.1-202ENST00000559481 777 ntBASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 LINC01115-203ENST00000606068 577 ntBASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 AC138649.4-201ENST00000612222 287 ntBASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
AP4E1Q9UPM8 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
AP4E1Q9UPM8 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms