Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 AC008741.2-201ENST00000612792 3115 ntBASIC18.49■□□□□ 0.55
RNF41Q9H4P4 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 AC123567.1-201ENST00000548294 1261 ntBASIC18.49■□□□□ 0.55
RNF41Q9H4P4 TP53TG3HP-202ENST00000569755 579 ntBASIC18.49■□□□□ 0.55
RNF41Q9H4P4 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 AC027307.3-201ENST00000594262 1100 ntBASIC18.49■□□□□ 0.55
RNF41Q9H4P4 CHCHD2P3-201ENST00000603038 451 ntBASIC18.49■□□□□ 0.55
RNF41Q9H4P4 AL662799.1-202ENST00000614205 422 ntBASIC18.49■□□□□ 0.55
RNF41Q9H4P4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 AC020658.6-201ENST00000623564 1870 ntBASIC18.49■□□□□ 0.55
RNF41Q9H4P4 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 AC092850.2-201ENST00000623821 2697 ntBASIC18.49■□□□□ 0.55
RNF41Q9H4P4 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF41Q9H4P4 NFIC-211ENST00000641145 8399 ntBASIC18.48■□□□□ 0.55
RNF41Q9H4P4 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 AC007431.3-201ENST00000623221 587 ntBASIC18.48■□□□□ 0.55
RNF41Q9H4P4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.48■□□□□ 0.55
RNF41Q9H4P4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 RPL5P21-201ENST00000404620 815 ntBASIC18.47■□□□□ 0.55
RNF41Q9H4P4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF41Q9H4P4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms