Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 ACA64.2-201ENST00000459014 129 ntBASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 IGHV3-71-201ENST00000523324 359 ntBASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 HNRNPUP1-201ENST00000554987 333 ntBASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 AC015936.2-201ENST00000593177 259 ntBASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 BRI3BPP1-201ENST00000594224 787 ntBASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 AC134407.2-201ENST00000625089 1978 ntBASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAIPQ9BWF2 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 SLED1-202ENST00000512051 380 ntBASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 KRT17P8-201ENST00000540749 863 ntBASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 AC097359.3-201ENST00000603982 1210 ntBASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 AC006449.6-201ENST00000612330 2296 ntBASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAIPQ9BWF2 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAIPQ9BWF2 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms