Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 AL365203.3-201ENST00000609742 2057 ntBASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.38
CCDC60Q8IWA6 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
CCDC60Q8IWA6 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC60Q8IWA6 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 AP005117.1-202ENST00000581724 1908 ntBASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 BTNL10-201ENST00000595971 695 ntBASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 AC233724.13-201ENST00000598383 410 ntBASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 AC018665.1-201ENST00000622927 1362 ntBASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC60Q8IWA6 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 SLC25A47P1-201ENST00000531577 414 ntBASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 AC022188.1-201ENST00000620960 1664 ntBASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC60Q8IWA6 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms