Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AC097359.3-201ENST00000603982 1210 ntBASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 AL390754.1-201ENST00000619088 582 ntBASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 CICP13-201ENST00000422015 2789 ntBASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 AL607033.1-201ENST00000623900 1599 ntBASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 LINC00554-201ENST00000564841 3011 ntBASIC18.55■□□□□ 0.56
SYNE3Q6ZMZ3 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 BASP1P1-201ENST00000430708 665 ntBASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 SDHAP3-202ENST00000515467 728 ntBASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 AL512361.1-201ENST00000554200 418 ntBASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 AC092384.3-202ENST00000564646 2873 ntBASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SYNE3Q6ZMZ3 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms