Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SUMO3P55854 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.21□□□□□ -0.13
SUMO3P55854 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.21□□□□□ -0.13
SUMO3P55854 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.21□□□□□ -0.13
SUMO3P55854 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.21□□□□□ -0.13
SUMO3P55854 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.21□□□□□ -0.13
SUMO3P55854 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
SUMO3P55854 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 BCRP1-201ENST00000444246 691 ntBASIC14.21□□□□□ -0.13
SUMO3P55854 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 SPDYE18-201ENST00000510091 1050 ntBASIC14.21□□□□□ -0.13
SUMO3P55854 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.21□□□□□ -0.13
SUMO3P55854 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.21□□□□□ -0.13
SUMO3P55854 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.21□□□□□ -0.13
SUMO3P55854 SPCS2P1-201ENST00000561636 679 ntBASIC14.21□□□□□ -0.13
SUMO3P55854 RARRES2P5-201ENST00000564013 466 ntBASIC14.21□□□□□ -0.13
SUMO3P55854 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 AL355385.1-201ENST00000606123 409 ntBASIC14.21□□□□□ -0.13
SUMO3P55854 AL391069.4-201ENST00000609583 481 ntBASIC14.21□□□□□ -0.13
SUMO3P55854 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.21□□□□□ -0.13
SUMO3P55854 AL645728.2-202ENST00000641679 227 ntBASIC14.21□□□□□ -0.13
SUMO3P55854 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.21□□□□□ -0.13
SUMO3P55854 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.21□□□□□ -0.13
SUMO3P55854 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.21□□□□□ -0.14
SUMO3P55854 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SUMO3P55854 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
SUMO3P55854 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SUMO3P55854 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SUMO3P55854 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SUMO3P55854 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.2□□□□□ -0.14
SUMO3P55854 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SUMO3P55854 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SUMO3P55854 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.2□□□□□ -0.14
SUMO3P55854 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SUMO3P55854 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.2□□□□□ -0.14
SUMO3P55854 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.2□□□□□ -0.14
SUMO3P55854 TPRX2P-201ENST00000535362 881 ntBASIC14.2□□□□□ -0.14
SUMO3P55854 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.2□□□□□ -0.14
SUMO3P55854 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.2□□□□□ -0.14
SUMO3P55854 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.2□□□□□ -0.14
SUMO3P55854 AC099568.2-201ENST00000609194 695 ntBASIC14.2□□□□□ -0.14
SUMO3P55854 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
SUMO3P55854 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SUMO3P55854 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.2□□□□□ -0.14
SUMO3P55854 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SUMO3P55854 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.2□□□□□ -0.14
SUMO3P55854 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SUMO3P55854 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.2□□□□□ -0.14
SUMO3P55854 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.19□□□□□ -0.14
SUMO3P55854 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SUMO3P55854 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SUMO3P55854 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.19□□□□□ -0.14
SUMO3P55854 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SUMO3P55854 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SUMO3P55854 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
SUMO3P55854 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SUMO3P55854 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SUMO3P55854 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.19□□□□□ -0.14
SUMO3P55854 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SUMO3P55854 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SUMO3P55854 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms