Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A4P53420 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.48■□□□□ 0.23
COL4A4P53420 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
COL4A4P53420 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 GAPDHP40-201ENST00000505218 1006 ntBASIC16.48■□□□□ 0.23
COL4A4P53420 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.48■□□□□ 0.23
COL4A4P53420 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL4A4P53420 AC026740.1-201ENST00000607068 791 ntBASIC16.48■□□□□ 0.23
COL4A4P53420 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.48■□□□□ 0.23
COL4A4P53420 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
COL4A4P53420 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL4A4P53420 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A4P53420 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A4P53420 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
COL4A4P53420 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL4A4P53420 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL4A4P53420 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.48■□□□□ 0.23
COL4A4P53420 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL4A4P53420 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.47■□□□□ 0.23
COL4A4P53420 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
COL4A4P53420 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.47■□□□□ 0.23
COL4A4P53420 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
COL4A4P53420 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.47■□□□□ 0.23
COL4A4P53420 KLF2P2-201ENST00000416807 1039 ntBASIC16.47■□□□□ 0.23
COL4A4P53420 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.47■□□□□ 0.23
COL4A4P53420 AC116345.2-201ENST00000512837 523 ntBASIC16.47■□□□□ 0.23
COL4A4P53420 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
COL4A4P53420 PRKXP1-201ENST00000561423 1122 ntBASIC16.47■□□□□ 0.23
COL4A4P53420 RN7SL555P-201ENST00000584742 339 ntBASIC16.47■□□□□ 0.23
COL4A4P53420 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.47■□□□□ 0.23
COL4A4P53420 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.47■□□□□ 0.23
COL4A4P53420 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.47■□□□□ 0.23
COL4A4P53420 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
COL4A4P53420 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
COL4A4P53420 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.47■□□□□ 0.23
COL4A4P53420 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
COL4A4P53420 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.47■□□□□ 0.23
COL4A4P53420 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.47■□□□□ 0.23
COL4A4P53420 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A4P53420 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
COL4A4P53420 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A4P53420 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
COL4A4P53420 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
COL4A4P53420 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.46■□□□□ 0.23
COL4A4P53420 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
COL4A4P53420 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
COL4A4P53420 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.46■□□□□ 0.23
COL4A4P53420 AC106820.3-201ENST00000561653 397 ntBASIC16.46■□□□□ 0.23
COL4A4P53420 RN7SL713P-201ENST00000582127 302 ntBASIC16.46■□□□□ 0.23
COL4A4P53420 AC007663.3-201ENST00000609632 465 ntBASIC16.46■□□□□ 0.23
COL4A4P53420 CU633904.3-201ENST00000624042 1029 ntBASIC16.46■□□□□ 0.23
COL4A4P53420 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 AC007950.2-201ENST00000615045 2347 ntBASIC16.46■□□□□ 0.23
COL4A4P53420 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
COL4A4P53420 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A4P53420 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.46■□□□□ 0.23
COL4A4P53420 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A4P53420 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A4P53420 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
COL4A4P53420 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.46■□□□□ 0.23
COL4A4P53420 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.46■□□□□ 0.23
COL4A4P53420 AC148477.4-201ENST00000613430 1793 ntBASIC16.46■□□□□ 0.23
COL4A4P53420 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
COL4A4P53420 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A4P53420 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.46■□□□□ 0.23
COL4A4P53420 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms